Strain Fitness in Variovorax sp. SCN45 around GFF1545

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
142,687	-		GFF1544	0.82	-0.0
142,847	+				-0.0
142,866	+				-0.1
143,049	-				-1.9
143,049	-				-0.9
143,049	-				-0.4
143,277	-		GFF1545	0.13	+0.2
143,330	+		GFF1545	0.16	+0.8
143,330	+		GFF1545	0.16	-2.4
143,330	+		GFF1545	0.16	-0.9
143,331	-		GFF1545	0.17	-1.7
143,331	-		GFF1545	0.17	+0.7
143,331	-		GFF1545	0.17	-0.3
143,331	-		GFF1545	0.17	-0.5
143,331	-		GFF1545	0.17	+0.3
143,393	+		GFF1545	0.20	-1.1
143,393	+		GFF1545	0.20	-0.7
143,393	+		GFF1545	0.20	-1.7
143,393	+		GFF1545	0.20	-0.4
143,394	-		GFF1545	0.20	-2.7
143,501	+		GFF1545	0.26	-0.8
143,925	-		GFF1545	0.51	-0.6
144,246	-		GFF1545	0.70	+0.3
144,246	-		GFF1545	0.70	-0.6
144,246	-		GFF1545	0.70	+0.4
144,372	-		GFF1545	0.77	-0.4
144,372	-		GFF1545	0.77	-0.4
144,581	+		GFF1545	0.89	-0.8
144,582	-		GFF1545	0.89	-1.2
144,582	-		GFF1545	0.89	-1.4
144,698	+				+0.1
144,698	+				-1.4
144,800	+				-0.2
144,819	-				-0.4
144,819	-				-0.2
144,866	-				-0.2
144,866	-				+0.0
145,147	+		GFF1546	0.16	-2.4
145,147	+		GFF1546	0.16	-0.2
145,147	+		GFF1546	0.16	-1.1
145,147	+		GFF1546	0.16	+1.6
145,147	+		GFF1546	0.16	+0.1
145,148	-		GFF1546	0.16	-0.8
145,148	-		GFF1546	0.16	-0.4
145,555	+		GFF1546	0.43	+0.4
145,555	+		GFF1546	0.43	+0.4
145,556	-		GFF1546	0.43	+1.3
145,556	-		GFF1546	0.43	-0.9
145,582	+		GFF1546	0.45	-1.2