Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1355 and GFF1356 are separated by 529 nucleotides GFF1356 and GFF1357 are separated by 172 nucleotides GFF1357 and GFF1358 are separated by 28 nucleotides
GFF1355 - Transcriptional regulator, LysR family, at 698,153 to 699,058
GFF1355
GFF1356 - Putative manganese efflux pump MntP, at 699,588 to 700,157
GFF1356
GFF1357 - no description, at 700,330 to 700,533
GFF1357
GFF1358 - Transcriptional regulator, LysR family, at 700,562 to 701,557
GFF1358
Position (kb) 699
700
701 Strain fitness (log2 ratio) -2
-1
0
1
2 at 698.960 kb on + strand, within GFF1355 at 698.961 kb on - strand, within GFF1355 at 698.961 kb on - strand, within GFF1355 at 698.961 kb on - strand, within GFF1355 at 699.158 kb on + strand at 699.158 kb on + strand at 699.158 kb on + strand at 699.158 kb on + strand at 699.158 kb on + strand at 699.159 kb on - strand at 699.159 kb on - strand at 699.277 kb on + strand at 699.277 kb on + strand at 699.277 kb on + strand at 699.277 kb on + strand at 699.278 kb on - strand at 699.278 kb on - strand at 699.278 kb on - strand at 699.278 kb on - strand at 699.278 kb on - strand at 699.278 kb on - strand at 699.330 kb on + strand at 699.345 kb on + strand at 699.346 kb on - strand at 699.346 kb on - strand at 699.391 kb on + strand at 699.392 kb on - strand at 699.392 kb on - strand at 699.392 kb on - strand at 699.392 kb on - strand at 699.415 kb on + strand at 699.415 kb on + strand at 699.415 kb on + strand at 699.416 kb on - strand at 699.453 kb on + strand at 699.453 kb on + strand at 699.453 kb on + strand at 699.453 kb on + strand at 699.453 kb on + strand at 699.454 kb on - strand at 699.454 kb on - strand at 699.454 kb on - strand at 699.454 kb on - strand at 699.454 kb on - strand at 699.454 kb on - strand at 699.516 kb on + strand at 699.516 kb on + strand at 699.516 kb on + strand at 699.516 kb on + strand at 699.516 kb on + strand at 699.517 kb on - strand at 699.517 kb on - strand at 699.578 kb on + strand at 699.579 kb on - strand at 699.579 kb on - strand at 699.579 kb on - strand at 699.777 kb on + strand, within GFF1356 at 699.777 kb on + strand, within GFF1356 at 699.778 kb on - strand, within GFF1356 at 699.778 kb on - strand, within GFF1356 at 700.131 kb on + strand at 700.131 kb on + strand at 700.131 kb on + strand at 700.132 kb on - strand at 700.132 kb on - strand at 700.274 kb on + strand at 700.285 kb on + strand at 700.289 kb on + strand at 700.289 kb on + strand at 700.289 kb on + strand at 700.290 kb on - strand at 700.290 kb on - strand at 700.290 kb on - strand at 700.296 kb on + strand at 700.296 kb on + strand at 700.296 kb on + strand at 700.296 kb on + strand at 700.296 kb on + strand at 700.296 kb on + strand at 700.296 kb on + strand at 700.297 kb on - strand at 700.297 kb on - strand at 700.299 kb on + strand at 700.299 kb on + strand at 700.299 kb on + strand at 700.299 kb on + strand at 700.299 kb on + strand at 700.299 kb on + strand at 700.300 kb on - strand at 700.300 kb on - strand at 700.300 kb on - strand at 700.310 kb on + strand at 700.311 kb on - strand at 700.311 kb on - strand at 700.311 kb on - strand at 700.339 kb on + strand at 700.339 kb on + strand at 700.339 kb on + strand at 700.411 kb on + strand, within GFF1357 at 700.411 kb on + strand, within GFF1357 at 700.411 kb on + strand, within GFF1357 at 700.411 kb on + strand, within GFF1357 at 700.411 kb on + strand, within GFF1357 at 700.412 kb on - strand, within GFF1357 at 700.412 kb on - strand, within GFF1357 at 700.412 kb on - strand, within GFF1357 at 700.412 kb on - strand, within GFF1357 at 700.412 kb on - strand, within GFF1357 at 700.412 kb on - strand, within GFF1357 at 700.413 kb on + strand, within GFF1357 at 700.413 kb on + strand, within GFF1357 at 700.413 kb on + strand, within GFF1357 at 700.413 kb on + strand, within GFF1357 at 700.414 kb on - strand, within GFF1357 at 700.495 kb on + strand, within GFF1357 at 700.495 kb on + strand, within GFF1357 at 700.495 kb on + strand, within GFF1357 at 700.495 kb on + strand, within GFF1357 at 700.495 kb on + strand, within GFF1357 at 700.496 kb on - strand, within GFF1357 at 700.496 kb on - strand, within GFF1357 at 700.496 kb on - strand, within GFF1357 at 700.496 kb on - strand, within GFF1357 at 700.496 kb on - strand, within GFF1357 at 700.502 kb on + strand, within GFF1357 at 700.716 kb on + strand, within GFF1358 at 700.716 kb on + strand, within GFF1358 at 700.716 kb on + strand, within GFF1358 at 700.716 kb on + strand, within GFF1358 at 700.716 kb on + strand, within GFF1358 at 700.717 kb on - strand, within GFF1358 at 700.717 kb on - strand, within GFF1358 at 700.717 kb on - strand, within GFF1358 at 700.717 kb on - strand, within GFF1358 at 701.037 kb on + strand, within GFF1358 at 701.038 kb on - strand, within GFF1358 at 701.137 kb on + strand, within GFF1358
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 698,960 + GFF1355 0.89 +0.8 698,961 - GFF1355 0.89 -1.0 698,961 - GFF1355 0.89 -0.6 698,961 - GFF1355 0.89 +1.0 699,158 + +1.0 699,158 + -0.1 699,158 + -0.2 699,158 + -0.1 699,158 + -0.3 699,159 - +0.0 699,159 - -2.2 699,277 + -0.4 699,277 + +0.2 699,277 + +0.3 699,277 + +0.1 699,278 - +0.1 699,278 - +0.2 699,278 - -1.0 699,278 - -0.3 699,278 - +0.0 699,278 - -1.7 699,330 + -0.8 699,345 + -0.2 699,346 - -0.2 699,346 - +0.1 699,391 + -0.3 699,392 - +0.6 699,392 - +0.2 699,392 - +0.8 699,392 - +0.1 699,415 + -0.3 699,415 + -1.0 699,415 + -1.2 699,416 - +0.1 699,453 + -0.3 699,453 + +0.6 699,453 + +0.4 699,453 + -0.5 699,453 + -1.8 699,454 - -0.4 699,454 - +0.3 699,454 - +0.5 699,454 - -0.2 699,454 - +1.3 699,454 - -0.5 699,516 + -0.9 699,516 + -0.2 699,516 + +1.3 699,516 + -0.5 699,516 + -0.2 699,517 - -1.5 699,517 - +0.8 699,578 + +0.3 699,579 - -0.4 699,579 - -0.6 699,579 - +1.4 699,777 + GFF1356 0.33 -0.3 699,777 + GFF1356 0.33 -0.6 699,778 - GFF1356 0.33 -0.5 699,778 - GFF1356 0.33 -1.7 700,131 + -0.5 700,131 + -0.8 700,131 + -0.1 700,132 - -0.1 700,132 - -1.0 700,274 + -1.2 700,285 + -0.3 700,289 + -0.1 700,289 + -0.3 700,289 + -0.9 700,290 - -0.3 700,290 - -0.6 700,290 - +1.3 700,296 + -0.0 700,296 + -0.8 700,296 + +0.4 700,296 + +0.1 700,296 + +1.7 700,296 + +0.0 700,296 + +1.5 700,297 - -0.3 700,297 - +0.0 700,299 + +0.2 700,299 + -0.0 700,299 + -0.4 700,299 + -0.5 700,299 + +0.9 700,299 + -0.4 700,300 - -0.7 700,300 - +0.0 700,300 - +0.4 700,310 + +1.3 700,311 - -1.3 700,311 - +0.6 700,311 - -0.4 700,339 + +1.3 700,339 + +2.0 700,339 + +0.8 700,411 + GFF1357 0.40 +0.2 700,411 + GFF1357 0.40 -0.5 700,411 + GFF1357 0.40 -1.4 700,411 + GFF1357 0.40 -0.3 700,411 + GFF1357 0.40 -0.7 700,412 - GFF1357 0.40 +1.3 700,412 - GFF1357 0.40 +0.1 700,412 - GFF1357 0.40 +0.3 700,412 - GFF1357 0.40 -0.1 700,412 - GFF1357 0.40 +1.3 700,412 - GFF1357 0.40 -0.0 700,413 + GFF1357 0.41 -1.0 700,413 + GFF1357 0.41 -0.7 700,413 + GFF1357 0.41 -1.0 700,413 + GFF1357 0.41 -0.4 700,414 - GFF1357 0.41 -0.3 700,495 + GFF1357 0.81 +0.3 700,495 + GFF1357 0.81 +0.1 700,495 + GFF1357 0.81 -0.3 700,495 + GFF1357 0.81 +0.1 700,495 + GFF1357 0.81 +0.1 700,496 - GFF1357 0.81 +0.0 700,496 - GFF1357 0.81 -0.1 700,496 - GFF1357 0.81 +0.2 700,496 - GFF1357 0.81 +0.6 700,496 - GFF1357 0.81 +0.1 700,502 + GFF1357 0.84 -0.1 700,716 + GFF1358 0.15 -0.0 700,716 + GFF1358 0.15 +0.5 700,716 + GFF1358 0.15 +0.6 700,716 + GFF1358 0.15 +0.3 700,716 + GFF1358 0.15 +0.3 700,717 - GFF1358 0.16 +0.6 700,717 - GFF1358 0.16 +0.1 700,717 - GFF1358 0.16 -0.3 700,717 - GFF1358 0.16 +0.1 701,037 + GFF1358 0.48 -0.6 701,038 - GFF1358 0.48 -0.0 701,137 + GFF1358 0.58 -0.1
Or see this region's nucleotide sequence