Strain Fitness in Variovorax sp. SCN45 around GFF1225

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1224 and GFF1225 are separated by 149 nucleotidesGFF1225 and GFF1226 are separated by 10 nucleotides GFF1224 - Transcriptional regulator, LysR family, at 543,691 to 544,584 GFF1224 GFF1225 - Glycine/D-amino acid oxidases (deaminating), at 544,734 to 545,906 GFF1225 GFF1226 - Heavy-chain fibroin (Fragment), at 545,917 to 547,248 GFF1226 Position (kb) 544 545 546Strain fitness (log2 ratio) -2 -1 0 1 2at 543.773 kb on + strandat 543.773 kb on + strandat 543.773 kb on + strandat 543.773 kb on + strandat 543.774 kb on - strandat 543.774 kb on - strandat 543.774 kb on - strandat 543.774 kb on - strandat 543.774 kb on - strandat 543.776 kb on + strandat 543.776 kb on + strandat 543.777 kb on - strandat 543.777 kb on - strandat 543.777 kb on - strandat 543.777 kb on - strandat 543.917 kb on + strand, within GFF1224at 543.947 kb on + strand, within GFF1224at 543.947 kb on + strand, within GFF1224at 543.947 kb on + strand, within GFF1224at 543.947 kb on + strand, within GFF1224at 543.948 kb on - strand, within GFF1224at 543.948 kb on - strand, within GFF1224at 543.968 kb on + strand, within GFF1224at 543.968 kb on + strand, within GFF1224at 543.968 kb on + strand, within GFF1224at 543.968 kb on + strand, within GFF1224at 543.968 kb on + strand, within GFF1224at 543.968 kb on + strand, within GFF1224at 543.969 kb on - strand, within GFF1224at 543.969 kb on - strand, within GFF1224at 544.081 kb on + strand, within GFF1224at 544.145 kb on + strand, within GFF1224at 544.145 kb on + strand, within GFF1224at 544.161 kb on - strand, within GFF1224at 544.253 kb on - strand, within GFF1224at 544.380 kb on - strand, within GFF1224at 544.380 kb on - strand, within GFF1224at 544.655 kb on - strandat 544.686 kb on + strandat 544.785 kb on + strandat 544.785 kb on + strandat 544.785 kb on + strandat 544.932 kb on + strand, within GFF1225at 545.022 kb on + strand, within GFF1225at 545.022 kb on + strand, within GFF1225at 545.022 kb on + strand, within GFF1225at 545.022 kb on + strand, within GFF1225at 545.022 kb on + strand, within GFF1225at 545.023 kb on - strand, within GFF1225at 545.023 kb on - strand, within GFF1225at 545.193 kb on + strand, within GFF1225at 545.193 kb on + strand, within GFF1225at 545.193 kb on + strand, within GFF1225at 545.202 kb on + strand, within GFF1225at 545.202 kb on + strand, within GFF1225at 545.202 kb on + strand, within GFF1225at 545.202 kb on + strand, within GFF1225at 545.203 kb on - strand, within GFF1225at 545.203 kb on - strand, within GFF1225at 545.253 kb on + strand, within GFF1225at 545.253 kb on + strand, within GFF1225at 545.253 kb on + strand, within GFF1225at 545.254 kb on - strand, within GFF1225at 545.431 kb on + strand, within GFF1225at 545.431 kb on + strand, within GFF1225at 545.432 kb on - strand, within GFF1225at 545.432 kb on - strand, within GFF1225at 545.432 kb on - strand, within GFF1225at 545.583 kb on + strand, within GFF1225at 545.583 kb on + strand, within GFF1225at 545.583 kb on + strand, within GFF1225at 545.674 kb on - strand, within GFF1225at 545.676 kb on + strand, within GFF1225at 545.676 kb on + strand, within GFF1225at 545.676 kb on + strand, within GFF1225at 545.677 kb on - strand, within GFF1225at 545.677 kb on - strand, within GFF1225at 545.677 kb on - strand, within GFF1225at 545.677 kb on - strand, within GFF1225at 545.677 kb on - strand, within GFF1225at 545.740 kb on - strand, within GFF1225at 545.740 kb on - strand, within GFF1225at 545.904 kb on + strandat 545.904 kb on + strandat 545.905 kb on - strandat 545.905 kb on - strandat 545.999 kb on + strandat 546.000 kb on - strandat 546.000 kb on - strandat 546.000 kb on - strandat 546.185 kb on + strand, within GFF1226at 546.185 kb on + strand, within GFF1226at 546.185 kb on + strand, within GFF1226at 546.185 kb on + strand, within GFF1226at 546.185 kb on + strand, within GFF1226at 546.185 kb on + strand, within GFF1226at 546.185 kb on + strand, within GFF1226at 546.185 kb on + strand, within GFF1226at 546.185 kb on + strand, within GFF1226at 546.186 kb on - strand, within GFF1226at 546.186 kb on - strand, within GFF1226at 546.186 kb on - strand, within GFF1226at 546.186 kb on - strand, within GFF1226at 546.186 kb on - strand, within GFF1226at 546.186 kb on - strand, within GFF1226at 546.296 kb on + strand, within GFF1226at 546.296 kb on + strand, within GFF1226at 546.297 kb on - strand, within GFF1226at 546.297 kb on - strand, within GFF1226at 546.297 kb on - strand, within GFF1226at 546.386 kb on + strand, within GFF1226at 546.386 kb on + strand, within GFF1226at 546.545 kb on + strand, within GFF1226at 546.545 kb on + strand, within GFF1226at 546.545 kb on + strand, within GFF1226at 546.545 kb on + strand, within GFF1226at 546.545 kb on + strand, within GFF1226at 546.545 kb on + strand, within GFF1226at 546.545 kb on + strand, within GFF1226at 546.546 kb on - strand, within GFF1226at 546.546 kb on - strand, within GFF1226at 546.546 kb on - strand, within GFF1226at 546.546 kb on - strand, within GFF1226at 546.546 kb on - strand, within GFF1226at 546.546 kb on - strand, within GFF1226at 546.548 kb on + strand, within GFF1226at 546.548 kb on + strand, within GFF1226at 546.548 kb on + strand, within GFF1226at 546.548 kb on + strand, within GFF1226at 546.548 kb on + strand, within GFF1226at 546.548 kb on + strand, within GFF1226at 546.548 kb on + strand, within GFF1226at 546.548 kb on + strand, within GFF1226at 546.548 kb on + strand, within GFF1226at 546.549 kb on - strand, within GFF1226at 546.549 kb on - strand, within GFF1226at 546.549 kb on - strand, within GFF1226at 546.549 kb on - strand, within GFF1226at 546.549 kb on - strand, within GFF1226at 546.549 kb on - strand, within GFF1226at 546.788 kb on + strand, within GFF1226at 546.788 kb on + strand, within GFF1226at 546.788 kb on + strand, within GFF1226at 546.788 kb on + strand, within GFF1226at 546.789 kb on - strand, within GFF1226at 546.789 kb on - strand, within GFF1226at 546.789 kb on - strand, within GFF1226

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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543,773 + -0.9
543,773 + +2.0
543,773 + +0.6
543,773 + -1.0
543,774 - +0.0
543,774 - -1.0
543,774 - +0.8
543,774 - +0.1
543,774 - +0.1
543,776 + +0.8
543,776 + +0.6
543,777 - -0.1
543,777 - +0.8
543,777 - +0.3
543,777 - +1.7
543,917 + GFF1224 0.25 -0.1
543,947 + GFF1224 0.29 -0.7
543,947 + GFF1224 0.29 -2.2
543,947 + GFF1224 0.29 -0.8
543,947 + GFF1224 0.29 +0.6
543,948 - GFF1224 0.29 +0.4
543,948 - GFF1224 0.29 -0.5
543,968 + GFF1224 0.31 +0.6
543,968 + GFF1224 0.31 +1.3
543,968 + GFF1224 0.31 -1.7
543,968 + GFF1224 0.31 -0.2
543,968 + GFF1224 0.31 -0.8
543,968 + GFF1224 0.31 -0.1
543,969 - GFF1224 0.31 -0.1
543,969 - GFF1224 0.31 +1.3
544,081 + GFF1224 0.44 -0.4
544,145 + GFF1224 0.51 +0.2
544,145 + GFF1224 0.51 -0.5
544,161 - GFF1224 0.53 -1.4
544,253 - GFF1224 0.63 -0.2
544,380 - GFF1224 0.77 -1.7
544,380 - GFF1224 0.77 +0.1
544,655 - +0.4
544,686 + -1.5
544,785 + +0.4
544,785 + -0.0
544,785 + -0.3
544,932 + GFF1225 0.17 -1.7
545,022 + GFF1225 0.25 -0.3
545,022 + GFF1225 0.25 -1.1
545,022 + GFF1225 0.25 -1.4
545,022 + GFF1225 0.25 +0.2
545,022 + GFF1225 0.25 +1.1
545,023 - GFF1225 0.25 -0.0
545,023 - GFF1225 0.25 -0.7
545,193 + GFF1225 0.39 -0.7
545,193 + GFF1225 0.39 -0.3
545,193 + GFF1225 0.39 -0.6
545,202 + GFF1225 0.40 -0.7
545,202 + GFF1225 0.40 +0.3
545,202 + GFF1225 0.40 -0.6
545,202 + GFF1225 0.40 +0.0
545,203 - GFF1225 0.40 -1.4
545,203 - GFF1225 0.40 +1.3
545,253 + GFF1225 0.44 +0.1
545,253 + GFF1225 0.44 +0.2
545,253 + GFF1225 0.44 +0.8
545,254 - GFF1225 0.44 -1.3
545,431 + GFF1225 0.59 -1.0
545,431 + GFF1225 0.59 -0.3
545,432 - GFF1225 0.60 -0.1
545,432 - GFF1225 0.60 -0.5
545,432 - GFF1225 0.60 +0.2
545,583 + GFF1225 0.72 -0.3
545,583 + GFF1225 0.72 -2.0
545,583 + GFF1225 0.72 +0.1
545,674 - GFF1225 0.80 -1.2
545,676 + GFF1225 0.80 -0.6
545,676 + GFF1225 0.80 -0.6
545,676 + GFF1225 0.80 -0.5
545,677 - GFF1225 0.80 -2.2
545,677 - GFF1225 0.80 +0.1
545,677 - GFF1225 0.80 -1.1
545,677 - GFF1225 0.80 +0.3
545,677 - GFF1225 0.80 +0.7
545,740 - GFF1225 0.86 -1.3
545,740 - GFF1225 0.86 -0.4
545,904 + -1.0
545,904 + -0.5
545,905 - +0.3
545,905 - -0.3
545,999 + +0.3
546,000 - +0.2
546,000 - -1.8
546,000 - +0.4
546,185 + GFF1226 0.20 -0.5
546,185 + GFF1226 0.20 -0.1
546,185 + GFF1226 0.20 -0.1
546,185 + GFF1226 0.20 -0.3
546,185 + GFF1226 0.20 +0.1
546,185 + GFF1226 0.20 +0.4
546,185 + GFF1226 0.20 +0.2
546,185 + GFF1226 0.20 +1.7
546,185 + GFF1226 0.20 -0.6
546,186 - GFF1226 0.20 -1.3
546,186 - GFF1226 0.20 -0.0
546,186 - GFF1226 0.20 +0.1
546,186 - GFF1226 0.20 -1.1
546,186 - GFF1226 0.20 +0.5
546,186 - GFF1226 0.20 +0.7
546,296 + GFF1226 0.28 -0.5
546,296 + GFF1226 0.28 +0.7
546,297 - GFF1226 0.29 -0.2
546,297 - GFF1226 0.29 -1.4
546,297 - GFF1226 0.29 -0.6
546,386 + GFF1226 0.35 +0.3
546,386 + GFF1226 0.35 -1.0
546,545 + GFF1226 0.47 +0.4
546,545 + GFF1226 0.47 -1.1
546,545 + GFF1226 0.47 +0.1
546,545 + GFF1226 0.47 -1.9
546,545 + GFF1226 0.47 -0.6
546,545 + GFF1226 0.47 -0.8
546,545 + GFF1226 0.47 +0.6
546,546 - GFF1226 0.47 -0.1
546,546 - GFF1226 0.47 -1.5
546,546 - GFF1226 0.47 +0.0
546,546 - GFF1226 0.47 +0.7
546,546 - GFF1226 0.47 +1.3
546,546 - GFF1226 0.47 -1.0
546,548 + GFF1226 0.47 +0.3
546,548 + GFF1226 0.47 +0.5
546,548 + GFF1226 0.47 -0.9
546,548 + GFF1226 0.47 -1.4
546,548 + GFF1226 0.47 -1.3
546,548 + GFF1226 0.47 +0.1
546,548 + GFF1226 0.47 -0.2
546,548 + GFF1226 0.47 +0.5
546,548 + GFF1226 0.47 -0.1
546,549 - GFF1226 0.47 +0.1
546,549 - GFF1226 0.47 -0.2
546,549 - GFF1226 0.47 +0.4
546,549 - GFF1226 0.47 -0.0
546,549 - GFF1226 0.47 -1.3
546,549 - GFF1226 0.47 -0.3
546,788 + GFF1226 0.65 +0.0
546,788 + GFF1226 0.65 -1.2
546,788 + GFF1226 0.65 -0.5
546,788 + GFF1226 0.65 -0.4
546,789 - GFF1226 0.65 +0.1
546,789 - GFF1226 0.65 -0.8
546,789 - GFF1226 0.65 +0.9

Or see this region's nucleotide sequence