Strain Fitness in Variovorax sp. SCN45 around GFF110

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
138,280	+		GFF109	0.65	+0.4
138,280	+		GFF109	0.65	-0.5
138,280	+		GFF109	0.65	+0.9
138,280	+		GFF109	0.65	+0.5
138,280	+		GFF109	0.65	+0.4
138,281	-		GFF109	0.65	+0.3
138,281	-		GFF109	0.65	-0.6
138,281	-		GFF109	0.65	-0.0
138,282	+		GFF109	0.65	-0.6
138,282	+		GFF109	0.65	-1.1
138,282	+		GFF109	0.65	-0.2
138,282	+		GFF109	0.65	-0.6
138,282	+		GFF109	0.65	-0.2
138,283	-		GFF109	0.65	-1.1
138,283	-		GFF109	0.65	-0.1
138,732	+		GFF109	0.82	-0.1
138,732	+		GFF109	0.82	+1.2
138,732	+		GFF109	0.82	-0.2
138,732	+		GFF109	0.82	-0.1
138,732	+		GFF109	0.82	+1.4
138,733	-		GFF109	0.82	+0.5
138,733	-		GFF109	0.82	-1.1
138,733	-		GFF109	0.82	-1.3
138,879	+		GFF109	0.87	-0.8
138,978	+				+0.0
138,978	+				-0.8
138,979	-				-1.2
138,979	-				-0.6
139,218	+				+0.0
139,218	+				+0.7
139,218	+				+0.4
139,218	+				-0.2
139,218	+				-1.0
139,219	-				-0.1
139,219	-				-0.0
139,219	-				+0.3
139,219	-				-1.4
139,219	-				-0.2
139,227	+				+1.2
139,442	+		GFF110	0.21	+0.6
139,442	+		GFF110	0.21	-0.5
139,443	-		GFF110	0.21	-0.8
139,443	-		GFF110	0.21	-0.7
139,553	+		GFF110	0.33	-0.0
139,553	+		GFF110	0.33	+0.1
139,553	+		GFF110	0.33	-0.2
139,553	+		GFF110	0.33	+1.2
139,554	-		GFF110	0.33	-0.1
139,745	+		GFF110	0.53	-0.3
139,746	-		GFF110	0.53	-0.0
139,746	-		GFF110	0.53	+0.3
139,746	-		GFF110	0.53	-0.4
139,746	-		GFF110	0.53	-0.8
139,928	+		GFF110	0.72	-0.2
139,928	+		GFF110	0.72	+0.7
139,928	+		GFF110	0.72	+3.2
139,929	-		GFF110	0.72	-0.3
140,121	+				+0.8
140,132	+				-1.6
140,132	+				+0.5
140,278	+				-0.1
140,278	+				+0.3
140,278	+				-0.1
140,279	-				-0.1
140,279	-				+0.2
140,404	+		GFF111	0.20	-1.1
140,404	+		GFF111	0.20	-0.3
140,794	+		GFF111	0.58	-1.6
140,794	+		GFF111	0.58	+0.0
140,795	-		GFF111	0.58	-0.1
140,795	-		GFF111	0.58	+0.5
140,795	-		GFF111	0.58	+1.1
140,795	-		GFF111	0.58	+1.4
141,028	+		GFF111	0.81	-0.8