Experiment: Mucin from porcine stomach type III (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00040 and ABI39_RS00045 are separated by 105 nucleotides ABI39_RS00045 and ABI39_RS00050 are separated by 160 nucleotides ABI39_RS00050 and ABI39_RS23145 are separated by 155 nucleotides
ABI39_RS00040: ABI39_RS00040 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB, at 10,881 to 12,197
_RS00040
ABI39_RS00045: ABI39_RS00045 - long-chain fatty acid--CoA ligase, at 12,303 to 13,976
_RS00045
ABI39_RS00050: ABI39_RS00050 - hypothetical protein, at 14,137 to 14,337
_RS00050
ABI39_RS23145: ABI39_RS23145 - hypothetical protein, at 14,493 to 15,183
_RS23145
Position (kb) 12
13
14 Strain fitness (log2 ratio) -1
0
1
2 at 11.905 kb on - strand, within ABI39_RS00040 at 12.085 kb on - strand at 12.227 kb on - strand at 12.266 kb on + strand at 12.379 kb on - strand at 12.403 kb on - strand at 12.428 kb on + strand at 12.440 kb on - strand at 12.483 kb on - strand, within ABI39_RS00045 at 12.546 kb on - strand, within ABI39_RS00045 at 12.668 kb on - strand, within ABI39_RS00045 at 12.767 kb on + strand, within ABI39_RS00045 at 12.796 kb on - strand, within ABI39_RS00045 at 12.814 kb on - strand, within ABI39_RS00045 at 12.965 kb on - strand, within ABI39_RS00045 at 13.048 kb on + strand, within ABI39_RS00045 at 13.099 kb on + strand, within ABI39_RS00045 at 13.118 kb on + strand, within ABI39_RS00045 at 13.119 kb on - strand, within ABI39_RS00045 at 13.136 kb on - strand, within ABI39_RS00045 at 13.205 kb on - strand, within ABI39_RS00045 at 13.213 kb on + strand, within ABI39_RS00045 at 13.227 kb on + strand, within ABI39_RS00045 at 13.337 kb on - strand, within ABI39_RS00045 at 13.478 kb on + strand, within ABI39_RS00045 at 13.501 kb on + strand, within ABI39_RS00045 at 13.530 kb on + strand, within ABI39_RS00045 at 13.531 kb on - strand, within ABI39_RS00045 at 13.603 kb on + strand, within ABI39_RS00045 at 13.603 kb on + strand, within ABI39_RS00045 at 13.604 kb on - strand, within ABI39_RS00045 at 13.623 kb on + strand, within ABI39_RS00045 at 13.627 kb on + strand, within ABI39_RS00045 at 13.628 kb on - strand, within ABI39_RS00045 at 13.739 kb on - strand, within ABI39_RS00045 at 13.768 kb on + strand, within ABI39_RS00045 at 13.771 kb on - strand, within ABI39_RS00045 at 13.832 kb on - strand at 13.953 kb on + strand at 13.954 kb on - strand at 13.954 kb on - strand at 14.018 kb on - strand at 14.108 kb on + strand at 14.112 kb on - strand at 14.244 kb on - strand, within ABI39_RS00050 at 14.244 kb on - strand, within ABI39_RS00050 at 14.335 kb on + strand at 14.407 kb on + strand at 14.454 kb on - strand at 14.544 kb on + strand at 14.557 kb on + strand at 14.558 kb on - strand at 14.561 kb on + strand at 14.578 kb on + strand, within ABI39_RS23145 at 14.578 kb on + strand, within ABI39_RS23145 at 14.583 kb on - strand, within ABI39_RS23145 at 14.635 kb on - strand, within ABI39_RS23145 at 14.687 kb on - strand, within ABI39_RS23145 at 14.745 kb on - strand, within ABI39_RS23145 at 14.745 kb on - strand, within ABI39_RS23145 at 14.879 kb on - strand, within ABI39_RS23145 at 14.956 kb on + strand, within ABI39_RS23145
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III (C) remove 11,905 - ABI39_RS00040 0.78 -1.4 12,085 - +0.4 12,227 - +0.5 12,266 + +1.6 12,379 - +1.5 12,403 - +1.7 12,428 + +1.4 12,440 - +1.1 12,483 - ABI39_RS00045 0.11 +1.9 12,546 - ABI39_RS00045 0.15 +1.8 12,668 - ABI39_RS00045 0.22 +1.6 12,767 + ABI39_RS00045 0.28 +1.0 12,796 - ABI39_RS00045 0.29 +2.0 12,814 - ABI39_RS00045 0.31 +1.7 12,965 - ABI39_RS00045 0.40 +1.3 13,048 + ABI39_RS00045 0.45 +1.8 13,099 + ABI39_RS00045 0.48 +1.8 13,118 + ABI39_RS00045 0.49 +1.4 13,119 - ABI39_RS00045 0.49 +1.3 13,136 - ABI39_RS00045 0.50 +1.3 13,205 - ABI39_RS00045 0.54 +1.7 13,213 + ABI39_RS00045 0.54 +1.4 13,227 + ABI39_RS00045 0.55 +2.0 13,337 - ABI39_RS00045 0.62 +2.1 13,478 + ABI39_RS00045 0.70 +1.9 13,501 + ABI39_RS00045 0.72 +1.0 13,530 + ABI39_RS00045 0.73 +1.6 13,531 - ABI39_RS00045 0.73 +1.2 13,603 + ABI39_RS00045 0.78 +1.5 13,603 + ABI39_RS00045 0.78 +1.5 13,604 - ABI39_RS00045 0.78 +1.4 13,623 + ABI39_RS00045 0.79 +1.5 13,627 + ABI39_RS00045 0.79 +1.2 13,628 - ABI39_RS00045 0.79 +1.4 13,739 - ABI39_RS00045 0.86 +1.4 13,768 + ABI39_RS00045 0.88 +1.6 13,771 - ABI39_RS00045 0.88 +2.0 13,832 - +1.5 13,953 + +1.7 13,954 - +0.4 13,954 - +1.0 14,018 - -0.3 14,108 + +0.7 14,112 - -1.3 14,244 - ABI39_RS00050 0.53 -0.5 14,244 - ABI39_RS00050 0.53 +0.0 14,335 + -0.0 14,407 + +0.2 14,454 - +0.5 14,544 + +0.5 14,557 + -1.3 14,558 - +0.5 14,561 + +0.1 14,578 + ABI39_RS23145 0.12 +0.2 14,578 + ABI39_RS23145 0.12 -0.0 14,583 - ABI39_RS23145 0.13 -0.2 14,635 - ABI39_RS23145 0.21 -0.5 14,687 - ABI39_RS23145 0.28 +0.5 14,745 - ABI39_RS23145 0.36 +0.2 14,745 - ABI39_RS23145 0.36 +0.0 14,879 - ABI39_RS23145 0.56 +0.1 14,956 + ABI39_RS23145 0.67 +0.3
Or see this region's nucleotide sequence