Strain Fitness in Escherichia coli ECOR38 around HEPCGN_18125

Experiment: K20

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntneuA and neuC are separated by 62 nucleotidesneuC and neuE overlap by 8 nucleotides HEPCGN_18120: neuA - N-acylneuraminate cytidylyltransferase, at 2,372,593 to 2,373,849 neuA HEPCGN_18125: neuC - UDP-N-acetylglucosamine 2-epimerase, at 2,373,912 to 2,375,021 neuC HEPCGN_18130: neuE - polysialic acid biosynthesis protein, at 2,375,014 to 2,376,162 neuE Position (kb) 2373 2374 2375 2376Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2373.996 kb on - strandat 2373.998 kb on + strandat 2374.158 kb on + strand, within neuCat 2374.241 kb on + strand, within neuCat 2374.358 kb on + strand, within neuCat 2374.362 kb on - strand, within neuCat 2374.409 kb on + strand, within neuCat 2374.520 kb on - strand, within neuCat 2374.597 kb on + strand, within neuCat 2374.851 kb on - strand, within neuCat 2374.892 kb on + strand, within neuCat 2375.094 kb on - strandat 2375.184 kb on - strand, within neuEat 2375.309 kb on + strand, within neuEat 2375.959 kb on - strand, within neuE

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Per-strain Table

Position Strand Gene LocusTag Fraction K20
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2,373,996 - -0.2
2,373,998 + -4.5
2,374,158 + neuC HEPCGN_18125 0.22 -2.9
2,374,241 + neuC HEPCGN_18125 0.30 -2.9
2,374,358 + neuC HEPCGN_18125 0.40 -2.2
2,374,362 - neuC HEPCGN_18125 0.41 -1.9
2,374,409 + neuC HEPCGN_18125 0.45 -4.4
2,374,520 - neuC HEPCGN_18125 0.55 -3.4
2,374,597 + neuC HEPCGN_18125 0.62 -1.0
2,374,851 - neuC HEPCGN_18125 0.85 -3.7
2,374,892 + neuC HEPCGN_18125 0.88 -3.2
2,375,094 - -0.9
2,375,184 - neuE HEPCGN_18130 0.15 -1.2
2,375,309 + neuE HEPCGN_18130 0.26 -1.5
2,375,959 - neuE HEPCGN_18130 0.82 -1.0

Or see this region's nucleotide sequence