Experiment: K20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt epmB and HEPCGN_10625 are separated by 234 nucleotides HEPCGN_10625 and yjeI are separated by 49 nucleotides yjeI and groL are separated by 134 nucleotides
HEPCGN_10620: epmB - EF-P beta-lysylation protein EpmB, at 863,847 to 864,875
epmB
HEPCGN_10625: HEPCGN_10625 - hypothetical protein, at 865,110 to 865,979
_10625
HEPCGN_10630: yjeI - Uncharacterized protein YjeI, at 866,029 to 866,382
yjeI
HEPCGN_10635: groL - chaperonin GroEL, at 866,517 to 868,163
groL
Position (kb) 865
866 Strain fitness (log2 ratio) -2
-1
0
1 at 864.145 kb on + strand, within epmB at 864.145 kb on + strand, within epmB at 864.164 kb on + strand, within epmB at 864.164 kb on + strand, within epmB at 864.165 kb on - strand, within epmB at 864.222 kb on + strand, within epmB at 864.222 kb on + strand, within epmB at 864.246 kb on + strand, within epmB at 864.272 kb on + strand, within epmB at 864.294 kb on + strand, within epmB at 864.294 kb on + strand, within epmB at 864.294 kb on + strand, within epmB at 864.295 kb on - strand, within epmB at 864.494 kb on + strand, within epmB at 864.542 kb on - strand, within epmB at 864.583 kb on + strand, within epmB at 864.659 kb on + strand, within epmB at 864.693 kb on + strand, within epmB at 864.694 kb on - strand, within epmB at 864.716 kb on - strand, within epmB at 864.716 kb on - strand, within epmB at 864.873 kb on + strand at 864.896 kb on - strand at 864.924 kb on + strand at 864.933 kb on - strand at 865.284 kb on - strand, within HEPCGN_10625 at 865.465 kb on + strand, within HEPCGN_10625 at 865.577 kb on + strand, within HEPCGN_10625 at 865.608 kb on + strand, within HEPCGN_10625 at 865.692 kb on + strand, within HEPCGN_10625 at 865.863 kb on + strand, within HEPCGN_10625 at 865.863 kb on + strand, within HEPCGN_10625 at 865.864 kb on - strand, within HEPCGN_10625 at 865.887 kb on - strand, within HEPCGN_10625 at 865.936 kb on + strand at 865.937 kb on - strand at 865.937 kb on - strand at 866.043 kb on + strand at 866.043 kb on + strand at 866.043 kb on + strand at 866.043 kb on + strand at 866.043 kb on + strand at 866.043 kb on + strand at 866.043 kb on + strand at 866.043 kb on + strand at 866.044 kb on - strand at 866.044 kb on - strand at 866.044 kb on - strand at 866.044 kb on - strand at 866.044 kb on - strand at 866.044 kb on - strand at 866.044 kb on - strand at 866.045 kb on + strand at 866.045 kb on + strand at 866.045 kb on + strand at 866.045 kb on + strand at 866.046 kb on - strand at 866.046 kb on - strand at 866.046 kb on - strand at 866.046 kb on - strand at 866.046 kb on - strand at 866.046 kb on - strand at 866.048 kb on - strand at 866.121 kb on - strand, within yjeI at 866.182 kb on - strand, within yjeI at 866.230 kb on - strand, within yjeI at 866.325 kb on + strand, within yjeI at 866.326 kb on - strand, within yjeI at 866.326 kb on - strand, within yjeI at 866.366 kb on - strand at 866.369 kb on + strand at 866.375 kb on - strand at 866.386 kb on - strand at 866.436 kb on + strand at 866.437 kb on - strand at 866.438 kb on + strand at 866.519 kb on - strand at 866.519 kb on - strand at 866.519 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K20 remove 864,145 + epmB HEPCGN_10620 0.29 -1.5 864,145 + epmB HEPCGN_10620 0.29 +0.7 864,164 + epmB HEPCGN_10620 0.31 +0.7 864,164 + epmB HEPCGN_10620 0.31 -0.9 864,165 - epmB HEPCGN_10620 0.31 -0.2 864,222 + epmB HEPCGN_10620 0.36 +0.2 864,222 + epmB HEPCGN_10620 0.36 -0.7 864,246 + epmB HEPCGN_10620 0.39 -0.7 864,272 + epmB HEPCGN_10620 0.41 +0.0 864,294 + epmB HEPCGN_10620 0.43 -1.5 864,294 + epmB HEPCGN_10620 0.43 -0.1 864,294 + epmB HEPCGN_10620 0.43 -1.1 864,295 - epmB HEPCGN_10620 0.44 -0.3 864,494 + epmB HEPCGN_10620 0.63 +1.2 864,542 - epmB HEPCGN_10620 0.68 -0.2 864,583 + epmB HEPCGN_10620 0.72 +0.7 864,659 + epmB HEPCGN_10620 0.79 +0.2 864,693 + epmB HEPCGN_10620 0.82 +0.3 864,694 - epmB HEPCGN_10620 0.82 +0.2 864,716 - epmB HEPCGN_10620 0.84 +1.0 864,716 - epmB HEPCGN_10620 0.84 -1.2 864,873 + +1.5 864,896 - +0.0 864,924 + +0.4 864,933 - +0.7 865,284 - HEPCGN_10625 0.20 +1.2 865,465 + HEPCGN_10625 0.41 -0.5 865,577 + HEPCGN_10625 0.54 -0.3 865,608 + HEPCGN_10625 0.57 -0.3 865,692 + HEPCGN_10625 0.67 +0.1 865,863 + HEPCGN_10625 0.87 -1.8 865,863 + HEPCGN_10625 0.87 +0.2 865,864 - HEPCGN_10625 0.87 -0.7 865,887 - HEPCGN_10625 0.89 +0.2 865,936 + +0.9 865,937 - +0.3 865,937 - -0.3 866,043 + -0.5 866,043 + -0.2 866,043 + -0.0 866,043 + +0.1 866,043 + -0.1 866,043 + -0.0 866,043 + +0.6 866,043 + +0.0 866,044 - +0.3 866,044 - -0.1 866,044 - -0.3 866,044 - +0.7 866,044 - -0.2 866,044 - -1.0 866,044 - -0.2 866,045 + +0.7 866,045 + +0.3 866,045 + +0.3 866,045 + +0.1 866,046 - -0.6 866,046 - -0.5 866,046 - +0.2 866,046 - -1.6 866,046 - -0.0 866,046 - -0.1 866,048 - +0.2 866,121 - yjeI HEPCGN_10630 0.26 +0.3 866,182 - yjeI HEPCGN_10630 0.43 -0.6 866,230 - yjeI HEPCGN_10630 0.57 -0.3 866,325 + yjeI HEPCGN_10630 0.84 -0.5 866,326 - yjeI HEPCGN_10630 0.84 -1.0 866,326 - yjeI HEPCGN_10630 0.84 -0.8 866,366 - +0.9 866,369 + +1.2 866,375 - +0.2 866,386 - +0.2 866,436 + -0.1 866,437 - -0.5 866,438 + +0.4 866,519 - -0.1 866,519 - -0.1 866,519 - +0.5
Or see this region's nucleotide sequence