Strain Fitness in Escherichia coli ECOR38 around HEPCGN_08595

Experiment: K20

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftsZ and ftsA are separated by 61 nucleotidesftsA and ftsQ overlap by 4 nucleotidesftsQ and ddlB are separated by 1 nucleotides HEPCGN_08585: ftsZ - cell division protein FtsZ, at 455,939 to 457,090 ftsZ HEPCGN_08595: ftsA - cell division protein FtsA, at 457,152 to 458,414 ftsA HEPCGN_08600: ftsQ - cell division protein FtsQ, at 458,411 to 459,241 ftsQ HEPCGN_08605: ddlB - D-alanine--D-alanine ligase, at 459,243 to 460,163 ddlB Position (kb) 457 458 459Strain fitness (log2 ratio) -1 0 1at 459.271 kb on - strandat 459.365 kb on - strand, within ddlBat 459.390 kb on - strand, within ddlBat 459.390 kb on - strand, within ddlBat 459.399 kb on - strand, within ddlB

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Per-strain Table

Position Strand Gene LocusTag Fraction K20
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459,271 - -0.6
459,365 - ddlB HEPCGN_08605 0.13 -0.1
459,390 - ddlB HEPCGN_08605 0.16 -0.1
459,390 - ddlB HEPCGN_08605 0.16 +0.0
459,399 - ddlB HEPCGN_08605 0.17 +0.2

Or see this region's nucleotide sequence