Experiment: K20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybtX and ybtS are separated by 27 nucleotides ybtS and HEPCGN_03600 are separated by 193 nucleotides
HEPCGN_03590: ybtX - putative signal transducer, at 640,794 to 642,074
ybtX
HEPCGN_03595: ybtS - salicylate synthase Irp9, at 642,102 to 643,406
ybtS
HEPCGN_03600: HEPCGN_03600 - integrase, at 643,600 to 644,862
_03600
Position (kb) 642
643
644 Strain fitness (log2 ratio) -2
-1
0
1
2 at 641.183 kb on + strand, within ybtX at 641.183 kb on + strand, within ybtX at 641.184 kb on - strand, within ybtX at 641.298 kb on + strand, within ybtX at 641.299 kb on - strand, within ybtX at 641.512 kb on + strand, within ybtX at 641.513 kb on - strand, within ybtX at 641.670 kb on + strand, within ybtX at 641.670 kb on + strand, within ybtX at 641.671 kb on - strand, within ybtX at 641.903 kb on + strand, within ybtX at 642.024 kb on + strand at 642.024 kb on + strand at 642.024 kb on + strand at 642.025 kb on - strand at 642.097 kb on - strand at 642.198 kb on + strand at 642.199 kb on - strand at 642.205 kb on - strand at 642.225 kb on + strand at 642.261 kb on - strand, within ybtS at 642.287 kb on + strand, within ybtS at 642.382 kb on + strand, within ybtS at 642.382 kb on + strand, within ybtS at 642.383 kb on - strand, within ybtS at 642.624 kb on + strand, within ybtS at 642.624 kb on + strand, within ybtS at 642.624 kb on + strand, within ybtS at 642.625 kb on - strand, within ybtS at 642.625 kb on - strand, within ybtS at 642.626 kb on + strand, within ybtS at 642.626 kb on + strand, within ybtS at 642.626 kb on + strand, within ybtS at 642.627 kb on - strand, within ybtS at 642.627 kb on - strand, within ybtS at 642.627 kb on - strand, within ybtS at 642.627 kb on - strand, within ybtS at 642.672 kb on + strand, within ybtS at 642.741 kb on + strand, within ybtS at 642.741 kb on + strand, within ybtS at 642.902 kb on + strand, within ybtS at 642.903 kb on - strand, within ybtS at 642.939 kb on - strand, within ybtS at 642.977 kb on + strand, within ybtS at 643.030 kb on + strand, within ybtS at 643.030 kb on + strand, within ybtS at 643.155 kb on - strand, within ybtS at 643.185 kb on - strand, within ybtS at 643.185 kb on - strand, within ybtS at 643.185 kb on - strand, within ybtS at 643.307 kb on - strand at 643.338 kb on - strand at 643.376 kb on - strand at 643.397 kb on - strand at 643.397 kb on - strand at 643.404 kb on + strand at 643.481 kb on + strand at 643.481 kb on + strand at 643.504 kb on + strand at 643.505 kb on - strand at 643.529 kb on + strand at 643.541 kb on + strand at 643.542 kb on - strand at 643.542 kb on - strand at 643.596 kb on + strand at 643.596 kb on + strand at 643.597 kb on - strand at 643.597 kb on - strand at 643.597 kb on - strand at 643.599 kb on - strand at 643.599 kb on - strand at 643.608 kb on + strand at 643.615 kb on - strand at 643.725 kb on + strand at 643.725 kb on + strand at 643.725 kb on + strand at 643.727 kb on + strand, within HEPCGN_03600 at 643.727 kb on + strand, within HEPCGN_03600 at 643.792 kb on + strand, within HEPCGN_03600 at 643.849 kb on - strand, within HEPCGN_03600 at 643.915 kb on - strand, within HEPCGN_03600 at 643.954 kb on - strand, within HEPCGN_03600 at 644.217 kb on + strand, within HEPCGN_03600 at 644.218 kb on - strand, within HEPCGN_03600 at 644.351 kb on - strand, within HEPCGN_03600 at 644.351 kb on - strand, within HEPCGN_03600 at 644.351 kb on - strand, within HEPCGN_03600 at 644.355 kb on + strand, within HEPCGN_03600
Per-strain Table
Position Strand Gene LocusTag Fraction K20 remove 641,183 + ybtX HEPCGN_03590 0.30 +0.4 641,183 + ybtX HEPCGN_03590 0.30 -0.2 641,184 - ybtX HEPCGN_03590 0.30 -0.3 641,298 + ybtX HEPCGN_03590 0.39 -0.2 641,299 - ybtX HEPCGN_03590 0.39 -0.7 641,512 + ybtX HEPCGN_03590 0.56 +0.2 641,513 - ybtX HEPCGN_03590 0.56 -0.0 641,670 + ybtX HEPCGN_03590 0.68 -0.1 641,670 + ybtX HEPCGN_03590 0.68 +2.4 641,671 - ybtX HEPCGN_03590 0.68 -1.1 641,903 + ybtX HEPCGN_03590 0.87 +0.3 642,024 + -0.4 642,024 + +0.1 642,024 + +0.5 642,025 - +2.2 642,097 - -0.8 642,198 + -1.3 642,199 - -0.3 642,205 - -1.5 642,225 + +0.3 642,261 - ybtS HEPCGN_03595 0.12 +0.7 642,287 + ybtS HEPCGN_03595 0.14 -0.3 642,382 + ybtS HEPCGN_03595 0.21 +0.7 642,382 + ybtS HEPCGN_03595 0.21 -0.4 642,383 - ybtS HEPCGN_03595 0.22 +0.4 642,624 + ybtS HEPCGN_03595 0.40 +1.3 642,624 + ybtS HEPCGN_03595 0.40 +0.2 642,624 + ybtS HEPCGN_03595 0.40 +0.1 642,625 - ybtS HEPCGN_03595 0.40 +1.6 642,625 - ybtS HEPCGN_03595 0.40 -1.8 642,626 + ybtS HEPCGN_03595 0.40 -0.3 642,626 + ybtS HEPCGN_03595 0.40 +0.7 642,626 + ybtS HEPCGN_03595 0.40 -0.1 642,627 - ybtS HEPCGN_03595 0.40 +0.2 642,627 - ybtS HEPCGN_03595 0.40 -0.8 642,627 - ybtS HEPCGN_03595 0.40 -0.1 642,627 - ybtS HEPCGN_03595 0.40 +0.1 642,672 + ybtS HEPCGN_03595 0.44 -0.6 642,741 + ybtS HEPCGN_03595 0.49 -0.3 642,741 + ybtS HEPCGN_03595 0.49 -0.4 642,902 + ybtS HEPCGN_03595 0.61 +0.1 642,903 - ybtS HEPCGN_03595 0.61 +0.5 642,939 - ybtS HEPCGN_03595 0.64 +2.1 642,977 + ybtS HEPCGN_03595 0.67 +0.8 643,030 + ybtS HEPCGN_03595 0.71 -0.4 643,030 + ybtS HEPCGN_03595 0.71 -0.3 643,155 - ybtS HEPCGN_03595 0.81 -0.7 643,185 - ybtS HEPCGN_03595 0.83 -0.6 643,185 - ybtS HEPCGN_03595 0.83 +0.3 643,185 - ybtS HEPCGN_03595 0.83 -0.4 643,307 - +0.7 643,338 - -0.7 643,376 - -0.0 643,397 - -0.5 643,397 - +0.3 643,404 + +0.3 643,481 + -2.5 643,481 + -0.6 643,504 + -0.6 643,505 - -0.4 643,529 + +0.4 643,541 + +0.8 643,542 - +0.5 643,542 - -0.7 643,596 + -0.9 643,596 + +0.3 643,597 - +0.5 643,597 - +0.4 643,597 - +0.3 643,599 - -0.7 643,599 - -1.1 643,608 + -0.3 643,615 - +2.0 643,725 + +0.3 643,725 + -0.9 643,725 + -1.0 643,727 + HEPCGN_03600 0.10 -0.2 643,727 + HEPCGN_03600 0.10 -0.2 643,792 + HEPCGN_03600 0.15 -0.9 643,849 - HEPCGN_03600 0.20 +0.1 643,915 - HEPCGN_03600 0.25 +0.9 643,954 - HEPCGN_03600 0.28 +1.0 644,217 + HEPCGN_03600 0.49 -0.2 644,218 - HEPCGN_03600 0.49 +0.6 644,351 - HEPCGN_03600 0.59 +0.2 644,351 - HEPCGN_03600 0.59 +0.2 644,351 - HEPCGN_03600 0.59 -0.1 644,355 + HEPCGN_03600 0.60 -0.5
Or see this region's nucleotide sequence