Experiment: K20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yegP and baeR are separated by 190 nucleotides baeR and baeS overlap by 4 nucleotides baeS and mdtD overlap by 4 nucleotides
HEPCGN_02860: yegP - UPF0339 protein YegP, at 479,983 to 480,315
yegP
HEPCGN_02865: baeR - two-component system response regulator BaeR, at 480,506 to 481,228
baeR
HEPCGN_02870: baeS - two-component system sensor histidine kinase BaeS, at 481,225 to 482,628
baeS
HEPCGN_02875: mdtD - Putative multidrug resistance protein MdtD, at 482,625 to 484,040
mdtD
Position (kb) 481
482
483 Strain fitness (log2 ratio) -2
-1
0
1 at 480.237 kb on + strand, within yegP at 480.238 kb on - strand, within yegP at 480.279 kb on + strand, within yegP at 480.291 kb on + strand at 480.356 kb on + strand at 480.356 kb on + strand at 480.641 kb on + strand, within baeR at 480.660 kb on + strand, within baeR at 480.661 kb on - strand, within baeR at 480.876 kb on - strand, within baeR at 480.907 kb on + strand, within baeR at 480.908 kb on - strand, within baeR at 480.908 kb on - strand, within baeR at 480.909 kb on + strand, within baeR at 480.909 kb on + strand, within baeR at 480.909 kb on + strand, within baeR at 480.909 kb on + strand, within baeR at 480.910 kb on - strand, within baeR at 481.084 kb on - strand, within baeR at 481.084 kb on - strand, within baeR at 481.092 kb on - strand, within baeR at 481.112 kb on - strand, within baeR at 481.193 kb on - strand at 481.229 kb on - strand at 481.229 kb on - strand at 481.229 kb on - strand at 481.270 kb on - strand at 481.317 kb on + strand at 481.317 kb on + strand at 481.318 kb on - strand at 481.318 kb on - strand at 481.318 kb on - strand at 481.588 kb on + strand, within baeS at 481.691 kb on - strand, within baeS at 481.855 kb on + strand, within baeS at 482.106 kb on + strand, within baeS at 482.352 kb on + strand, within baeS at 482.365 kb on - strand, within baeS at 482.395 kb on + strand, within baeS at 482.444 kb on + strand, within baeS at 482.491 kb on - strand at 482.504 kb on + strand at 482.504 kb on + strand at 482.532 kb on + strand at 482.654 kb on + strand at 482.658 kb on + strand at 482.658 kb on + strand at 482.658 kb on + strand at 482.659 kb on - strand at 482.729 kb on + strand at 482.729 kb on + strand at 482.740 kb on + strand at 482.741 kb on - strand at 482.744 kb on + strand at 483.087 kb on + strand, within mdtD at 483.195 kb on - strand, within mdtD at 483.258 kb on - strand, within mdtD at 483.319 kb on + strand, within mdtD at 483.320 kb on - strand, within mdtD at 483.320 kb on - strand, within mdtD at 483.383 kb on + strand, within mdtD at 483.383 kb on + strand, within mdtD at 483.411 kb on + strand, within mdtD at 483.479 kb on - strand, within mdtD at 483.489 kb on + strand, within mdtD at 483.562 kb on + strand, within mdtD at 483.562 kb on + strand, within mdtD
Per-strain Table
Position Strand Gene LocusTag Fraction K20 remove 480,237 + yegP HEPCGN_02860 0.76 -0.2 480,238 - yegP HEPCGN_02860 0.77 -1.4 480,279 + yegP HEPCGN_02860 0.89 +1.7 480,291 + +0.1 480,356 + -0.8 480,356 + -0.6 480,641 + baeR HEPCGN_02865 0.19 +0.4 480,660 + baeR HEPCGN_02865 0.21 +1.2 480,661 - baeR HEPCGN_02865 0.21 +0.7 480,876 - baeR HEPCGN_02865 0.51 -0.7 480,907 + baeR HEPCGN_02865 0.55 -0.7 480,908 - baeR HEPCGN_02865 0.56 +0.3 480,908 - baeR HEPCGN_02865 0.56 -0.7 480,909 + baeR HEPCGN_02865 0.56 +0.5 480,909 + baeR HEPCGN_02865 0.56 +0.3 480,909 + baeR HEPCGN_02865 0.56 +0.5 480,909 + baeR HEPCGN_02865 0.56 -0.9 480,910 - baeR HEPCGN_02865 0.56 -0.1 481,084 - baeR HEPCGN_02865 0.80 -0.1 481,084 - baeR HEPCGN_02865 0.80 +0.3 481,092 - baeR HEPCGN_02865 0.81 +0.1 481,112 - baeR HEPCGN_02865 0.84 -1.1 481,193 - -0.2 481,229 - +0.6 481,229 - -0.0 481,229 - +0.0 481,270 - +0.1 481,317 + +1.7 481,317 + +1.2 481,318 - -0.6 481,318 - +0.3 481,318 - +0.6 481,588 + baeS HEPCGN_02870 0.26 -0.2 481,691 - baeS HEPCGN_02870 0.33 +1.0 481,855 + baeS HEPCGN_02870 0.45 +0.4 482,106 + baeS HEPCGN_02870 0.63 -0.3 482,352 + baeS HEPCGN_02870 0.80 -0.4 482,365 - baeS HEPCGN_02870 0.81 -0.2 482,395 + baeS HEPCGN_02870 0.83 -0.4 482,444 + baeS HEPCGN_02870 0.87 -1.2 482,491 - +1.5 482,504 + +0.1 482,504 + -1.2 482,532 + +0.1 482,654 + -0.3 482,658 + +0.0 482,658 + +0.4 482,658 + -2.6 482,659 - -0.4 482,729 + -0.1 482,729 + +0.7 482,740 + +0.5 482,741 - -0.4 482,744 + +0.0 483,087 + mdtD HEPCGN_02875 0.33 +0.5 483,195 - mdtD HEPCGN_02875 0.40 +0.9 483,258 - mdtD HEPCGN_02875 0.45 -0.1 483,319 + mdtD HEPCGN_02875 0.49 -0.5 483,320 - mdtD HEPCGN_02875 0.49 -0.2 483,320 - mdtD HEPCGN_02875 0.49 +0.1 483,383 + mdtD HEPCGN_02875 0.54 -0.4 483,383 + mdtD HEPCGN_02875 0.54 +0.5 483,411 + mdtD HEPCGN_02875 0.56 +1.7 483,479 - mdtD HEPCGN_02875 0.60 -0.7 483,489 + mdtD HEPCGN_02875 0.61 +0.3 483,562 + mdtD HEPCGN_02875 0.66 +0.0 483,562 + mdtD HEPCGN_02875 0.66 +0.2
Or see this region's nucleotide sequence