Experiment: K20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ompC and HEPCGN_02420 are separated by 510 nucleotides HEPCGN_02420 and Ile2_trna are separated by 40 nucleotides Ile2_trna and Arg_trna are separated by 9 nucleotides Arg_trna and tolA are separated by 278 nucleotides
HEPCGN_02415: ompC - phosphoporin PhoE, at 393,614 to 394,696
ompC
HEPCGN_02420: HEPCGN_02420 - Site-specific DNA-methyltransferase, at 395,207 to 395,485
_02420
HEPCGN_02425: Ile2_trna - tRNA-Ile2(cat), at 395,526 to 395,601
_trna
HEPCGN_02430: Arg_trna - tRNA-Arg(tcg), at 395,611 to 395,687
_trna
HEPCGN_02435: tolA - cell envelope integrity protein TolA, at 395,966 to 396,394
tolA
Position (kb) 395
396 Strain fitness (log2 ratio) -2
-1
0
1 at 394.222 kb on + strand, within ompC at 394.223 kb on - strand, within ompC at 394.228 kb on - strand, within ompC at 394.329 kb on + strand, within ompC at 394.335 kb on - strand, within ompC at 394.524 kb on + strand, within ompC at 394.525 kb on - strand, within ompC at 394.525 kb on - strand, within ompC at 394.529 kb on - strand, within ompC at 394.529 kb on - strand, within ompC at 394.553 kb on - strand, within ompC at 394.564 kb on - strand, within ompC at 394.564 kb on - strand, within ompC at 394.590 kb on - strand at 394.664 kb on + strand at 394.665 kb on - strand at 394.665 kb on - strand at 394.699 kb on + strand at 394.913 kb on + strand at 395.060 kb on - strand at 395.123 kb on - strand at 395.407 kb on + strand, within HEPCGN_02420 at 395.407 kb on + strand, within HEPCGN_02420 at 395.467 kb on - strand at 395.487 kb on - strand at 395.602 kb on + strand at 395.602 kb on + strand at 395.602 kb on + strand at 395.689 kb on + strand at 395.753 kb on + strand at 395.755 kb on + strand at 395.756 kb on - strand at 395.756 kb on - strand at 395.805 kb on - strand at 395.805 kb on - strand at 395.843 kb on + strand at 395.843 kb on + strand at 395.889 kb on - strand at 395.892 kb on + strand at 395.893 kb on - strand at 396.050 kb on + strand, within tolA at 396.082 kb on - strand, within tolA at 396.146 kb on + strand, within tolA at 396.183 kb on + strand, within tolA at 396.230 kb on + strand, within tolA at 396.352 kb on - strand at 396.352 kb on - strand at 396.385 kb on + strand at 396.418 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction K20 remove 394,222 + ompC HEPCGN_02415 0.56 -0.0 394,223 - ompC HEPCGN_02415 0.56 -0.4 394,228 - ompC HEPCGN_02415 0.57 -0.9 394,329 + ompC HEPCGN_02415 0.66 +0.2 394,335 - ompC HEPCGN_02415 0.67 +0.1 394,524 + ompC HEPCGN_02415 0.84 +0.1 394,525 - ompC HEPCGN_02415 0.84 -0.7 394,525 - ompC HEPCGN_02415 0.84 -1.4 394,529 - ompC HEPCGN_02415 0.84 -0.3 394,529 - ompC HEPCGN_02415 0.84 +0.2 394,553 - ompC HEPCGN_02415 0.87 -0.2 394,564 - ompC HEPCGN_02415 0.88 -1.0 394,564 - ompC HEPCGN_02415 0.88 +0.2 394,590 - -0.4 394,664 + -0.1 394,665 - +0.9 394,665 - -0.8 394,699 + +1.4 394,913 + +0.1 395,060 - -1.9 395,123 - -1.0 395,407 + HEPCGN_02420 0.72 +0.7 395,407 + HEPCGN_02420 0.72 +0.4 395,467 - +0.7 395,487 - +0.1 395,602 + -0.3 395,602 + +0.1 395,602 + -0.8 395,689 + -0.4 395,753 + +0.4 395,755 + +0.0 395,756 - +1.1 395,756 - -0.5 395,805 - +0.3 395,805 - -0.4 395,843 + +0.2 395,843 + +0.4 395,889 - -0.4 395,892 + +1.2 395,893 - +0.7 396,050 + tolA HEPCGN_02435 0.20 -0.2 396,082 - tolA HEPCGN_02435 0.27 +1.2 396,146 + tolA HEPCGN_02435 0.42 -0.0 396,183 + tolA HEPCGN_02435 0.51 -0.3 396,230 + tolA HEPCGN_02435 0.62 -0.9 396,352 - +0.5 396,352 - +0.5 396,385 + -0.1 396,418 + +1.7
Or see this region's nucleotide sequence