Strain Fitness in Variovorax sp. SCN45 around GFF985

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF983 and GFF984 are separated by 40 nucleotidesGFF984 and GFF985 are separated by 184 nucleotidesGFF985 and GFF986 overlap by 4 nucleotides GFF983 - hypothetical protein, at 301,814 to 302,497 GFF983 GFF984 - Protein phosphatase 2C-like, at 302,538 to 303,230 GFF984 GFF985 - Uncharacterized protein SMc04000, at 303,415 to 303,618 GFF985 GFF986 - DinG family ATP-dependent helicase YoaA, at 303,615 to 305,705 GFF986 Position (kb) 303 304Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 302.506 kb on + strandat 302.506 kb on + strandat 302.507 kb on - strandat 302.582 kb on - strandat 302.662 kb on + strand, within GFF984at 302.662 kb on + strand, within GFF984at 302.662 kb on + strand, within GFF984at 302.663 kb on - strand, within GFF984at 302.663 kb on - strand, within GFF984at 302.663 kb on - strand, within GFF984at 302.663 kb on - strand, within GFF984at 302.663 kb on - strand, within GFF984at 302.663 kb on - strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.696 kb on - strand, within GFF984at 302.696 kb on - strand, within GFF984at 302.696 kb on - strand, within GFF984at 302.696 kb on - strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.828 kb on + strand, within GFF984at 302.829 kb on - strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 303.250 kb on + strandat 303.288 kb on + strandat 303.288 kb on + strandat 303.288 kb on + strandat 303.288 kb on + strandat 303.288 kb on + strandat 303.288 kb on + strandat 303.289 kb on - strandat 303.289 kb on - strandat 303.289 kb on - strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.365 kb on + strandat 303.365 kb on + strandat 303.365 kb on + strandat 303.365 kb on + strandat 303.365 kb on + strandat 303.365 kb on + strandat 303.365 kb on + strandat 303.365 kb on + strandat 303.366 kb on - strandat 303.366 kb on - strandat 303.366 kb on - strandat 303.366 kb on - strandat 303.366 kb on - strandat 303.366 kb on - strandat 303.366 kb on - strandat 303.366 kb on - strandat 303.368 kb on + strandat 303.369 kb on - strandat 303.369 kb on - strandat 303.714 kb on + strandat 303.801 kb on + strandat 303.801 kb on + strandat 303.801 kb on + strandat 303.802 kb on - strandat 303.802 kb on - strandat 303.802 kb on - strandat 303.954 kb on + strand, within GFF986at 303.954 kb on + strand, within GFF986at 303.954 kb on + strand, within GFF986at 303.954 kb on + strand, within GFF986at 303.954 kb on + strand, within GFF986at 303.954 kb on + strand, within GFF986at 303.954 kb on + strand, within GFF986at 303.955 kb on - strand, within GFF986at 303.955 kb on - strand, within GFF986at 303.955 kb on - strand, within GFF986at 303.955 kb on - strand, within GFF986at 303.955 kb on - strand, within GFF986at 303.955 kb on - strand, within GFF986at 303.955 kb on - strand, within GFF986at 304.049 kb on + strand, within GFF986at 304.049 kb on + strand, within GFF986at 304.049 kb on + strand, within GFF986at 304.049 kb on + strand, within GFF986at 304.111 kb on + strand, within GFF986at 304.111 kb on + strand, within GFF986at 304.112 kb on - strand, within GFF986at 304.112 kb on - strand, within GFF986

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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302,506 + -0.3
302,506 + +1.1
302,507 - +1.4
302,582 - +0.1
302,662 + GFF984 0.18 -0.3
302,662 + GFF984 0.18 +0.7
302,662 + GFF984 0.18 +0.3
302,663 - GFF984 0.18 +0.2
302,663 - GFF984 0.18 -0.2
302,663 - GFF984 0.18 -1.1
302,663 - GFF984 0.18 -0.2
302,663 - GFF984 0.18 -0.1
302,663 - GFF984 0.18 -0.5
302,695 + GFF984 0.23 +0.4
302,695 + GFF984 0.23 -2.9
302,695 + GFF984 0.23 +0.3
302,695 + GFF984 0.23 -0.2
302,695 + GFF984 0.23 +0.4
302,695 + GFF984 0.23 -0.3
302,695 + GFF984 0.23 +0.7
302,695 + GFF984 0.23 -0.4
302,696 - GFF984 0.23 +2.4
302,696 - GFF984 0.23 +0.0
302,696 - GFF984 0.23 -0.2
302,696 - GFF984 0.23 -1.0
302,755 + GFF984 0.31 +0.0
302,755 + GFF984 0.31 +0.2
302,755 + GFF984 0.31 -0.3
302,755 + GFF984 0.31 -0.0
302,755 + GFF984 0.31 -1.4
302,755 + GFF984 0.31 -0.8
302,755 + GFF984 0.31 -0.5
302,755 + GFF984 0.31 -0.1
302,755 + GFF984 0.31 -0.5
302,755 + GFF984 0.31 -0.7
302,755 + GFF984 0.31 +1.0
302,755 + GFF984 0.31 +1.2
302,755 + GFF984 0.31 -0.2
302,755 + GFF984 0.31 +0.3
302,755 + GFF984 0.31 +0.1
302,755 + GFF984 0.31 -0.3
302,755 + GFF984 0.31 -2.0
302,755 + GFF984 0.31 +0.2
302,755 + GFF984 0.31 +0.2
302,756 - GFF984 0.31 +0.3
302,756 - GFF984 0.31 +0.8
302,756 - GFF984 0.31 -0.8
302,756 - GFF984 0.31 -0.3
302,756 - GFF984 0.31 -2.2
302,756 - GFF984 0.31 +1.4
302,756 - GFF984 0.31 +0.0
302,756 - GFF984 0.31 +0.7
302,756 - GFF984 0.31 -0.1
302,756 - GFF984 0.31 -0.5
302,756 - GFF984 0.31 -0.6
302,756 - GFF984 0.31 +0.4
302,756 - GFF984 0.31 -1.7
302,756 - GFF984 0.31 -0.2
302,828 + GFF984 0.42 -0.3
302,829 - GFF984 0.42 +0.5
302,878 + GFF984 0.49 +0.5
302,878 + GFF984 0.49 +0.7
302,878 + GFF984 0.49 +0.5
302,878 + GFF984 0.49 -0.5
302,878 + GFF984 0.49 -1.8
302,878 + GFF984 0.49 +0.1
302,878 + GFF984 0.49 +0.1
302,878 + GFF984 0.49 +0.2
302,878 + GFF984 0.49 -0.5
302,878 + GFF984 0.49 -0.6
302,878 + GFF984 0.49 -0.3
302,879 - GFF984 0.49 -0.8
302,879 - GFF984 0.49 +0.1
302,879 - GFF984 0.49 +0.9
302,879 - GFF984 0.49 -0.2
302,879 - GFF984 0.49 -0.2
302,879 - GFF984 0.49 +0.8
302,879 - GFF984 0.49 -1.1
302,879 - GFF984 0.49 -0.6
302,879 - GFF984 0.49 -0.1
302,879 - GFF984 0.49 -1.7
302,879 - GFF984 0.49 -0.1
302,926 + GFF984 0.56 +0.9
302,926 + GFF984 0.56 +1.4
302,926 + GFF984 0.56 +0.3
302,926 + GFF984 0.56 -0.2
302,926 + GFF984 0.56 -0.7
302,926 + GFF984 0.56 +0.6
302,926 + GFF984 0.56 -0.0
302,926 + GFF984 0.56 -0.1
302,926 + GFF984 0.56 -0.5
302,926 + GFF984 0.56 +0.7
302,926 + GFF984 0.56 -0.6
302,927 - GFF984 0.56 -0.5
302,927 - GFF984 0.56 -0.5
302,927 - GFF984 0.56 -0.3
302,927 - GFF984 0.56 +0.0
302,927 - GFF984 0.56 -0.8
302,927 - GFF984 0.56 +0.4
302,927 - GFF984 0.56 -0.0
302,927 - GFF984 0.56 +0.4
302,927 - GFF984 0.56 +0.2
302,927 - GFF984 0.56 -0.4
302,927 - GFF984 0.56 -0.6
302,927 - GFF984 0.56 -0.2
302,927 - GFF984 0.56 +0.5
303,250 + -1.2
303,288 + -1.0
303,288 + -0.4
303,288 + -0.7
303,288 + +0.2
303,288 + -0.7
303,288 + -0.6
303,289 - +0.0
303,289 - -0.2
303,289 - -0.6
303,315 + +0.1
303,315 + +0.1
303,315 + -0.6
303,315 + +0.6
303,315 + -1.0
303,315 + -0.4
303,315 + +1.7
303,315 + +0.3
303,315 + -1.5
303,315 + +0.8
303,315 + -0.7
303,315 + +0.3
303,315 + +0.5
303,315 + -0.6
303,316 - -1.5
303,316 - -0.5
303,316 - -0.6
303,316 - +0.9
303,316 - -1.0
303,316 - -0.2
303,316 - +1.5
303,316 - -0.1
303,316 - +0.6
303,316 - +0.2
303,316 - -2.2
303,316 - +0.5
303,316 - -1.0
303,316 - -0.2
303,316 - -0.7
303,316 - -0.1
303,365 + +1.4
303,365 + -1.0
303,365 + -1.6
303,365 + -1.9
303,365 + -1.1
303,365 + +0.2
303,365 + -2.1
303,365 + -0.2
303,366 - -0.6
303,366 - +1.5
303,366 - -0.3
303,366 - +0.2
303,366 - -0.1
303,366 - -3.2
303,366 - +0.8
303,366 - -1.1
303,368 + -0.0
303,369 - -0.4
303,369 - -0.5
303,714 + -1.0
303,801 + -0.1
303,801 + +0.3
303,801 + +0.4
303,802 - +0.4
303,802 - -0.3
303,802 - -0.6
303,954 + GFF986 0.16 -0.3
303,954 + GFF986 0.16 -0.3
303,954 + GFF986 0.16 +0.2
303,954 + GFF986 0.16 -0.3
303,954 + GFF986 0.16 +0.2
303,954 + GFF986 0.16 -1.1
303,954 + GFF986 0.16 -0.5
303,955 - GFF986 0.16 -1.6
303,955 - GFF986 0.16 +0.8
303,955 - GFF986 0.16 -0.4
303,955 - GFF986 0.16 +0.3
303,955 - GFF986 0.16 -0.2
303,955 - GFF986 0.16 -0.6
303,955 - GFF986 0.16 -1.6
304,049 + GFF986 0.21 -1.6
304,049 + GFF986 0.21 -1.1
304,049 + GFF986 0.21 +0.1
304,049 + GFF986 0.21 -0.3
304,111 + GFF986 0.24 +0.5
304,111 + GFF986 0.24 -1.5
304,112 - GFF986 0.24 -0.0
304,112 - GFF986 0.24 +0.2

Or see this region's nucleotide sequence