Strain Fitness in Variovorax sp. SCN45 around GFF964

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF963 and GFF964 are separated by 5 nucleotidesGFF964 and GFF965 are separated by 76 nucleotidesGFF965 and GFF966 overlap by 4 nucleotides GFF963 - Oligopeptidase A (EC 3.4.24.70), at 273,738 to 275,807 GFF963 GFF964 - Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) / Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5), at 275,813 to 276,664 GFF964 GFF965 - Two-component transcriptional response regulator, LuxR family, at 276,741 to 277,373 GFF965 GFF966 - Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-), at 277,370 to 279,910 GFF966 Position (kb) 275 276 277Strain fitness (log2 ratio) -2 -1 0 1 2 3at 274.813 kb on + strand, within GFF963at 274.813 kb on + strand, within GFF963at 274.813 kb on + strand, within GFF963at 274.813 kb on + strand, within GFF963at 274.813 kb on + strand, within GFF963at 274.813 kb on + strand, within GFF963at 274.813 kb on + strand, within GFF963at 274.813 kb on + strand, within GFF963at 274.813 kb on + strand, within GFF963at 274.813 kb on + strand, within GFF963at 274.813 kb on + strand, within GFF963at 274.813 kb on + strand, within GFF963at 274.813 kb on + strand, within GFF963at 274.813 kb on + strand, within GFF963at 274.813 kb on + strand, within GFF963at 274.813 kb on + strand, within GFF963at 274.813 kb on + strand, within GFF963at 274.813 kb on + strand, within GFF963at 274.813 kb on + strand, within GFF963at 274.813 kb on + strand, within GFF963at 274.814 kb on - strand, within GFF963at 274.814 kb on - strand, within GFF963at 274.814 kb on - strand, within GFF963at 274.814 kb on - strand, within GFF963at 274.814 kb on - strand, within GFF963at 274.814 kb on - strand, within GFF963at 274.814 kb on - strand, within GFF963at 274.814 kb on - strand, within GFF963at 274.814 kb on - strand, within GFF963at 274.814 kb on - strand, within GFF963at 274.814 kb on - strand, within GFF963at 274.814 kb on - strand, within GFF963at 274.814 kb on - strand, within GFF963at 274.814 kb on - strand, within GFF963at 274.814 kb on - strand, within GFF963at 274.814 kb on - strand, within GFF963at 274.814 kb on - strand, within GFF963at 274.814 kb on - strand, within GFF963at 274.897 kb on + strand, within GFF963at 274.996 kb on + strand, within GFF963at 274.996 kb on + strand, within GFF963at 274.996 kb on + strand, within GFF963at 274.997 kb on - strand, within GFF963at 275.098 kb on + strand, within GFF963at 275.098 kb on + strand, within GFF963at 275.099 kb on - strand, within GFF963at 275.099 kb on - strand, within GFF963at 275.099 kb on - strand, within GFF963at 275.099 kb on - strand, within GFF963at 275.099 kb on - strand, within GFF963at 275.107 kb on + strand, within GFF963at 275.107 kb on + strand, within GFF963at 275.108 kb on - strand, within GFF963at 275.108 kb on - strand, within GFF963at 275.158 kb on + strand, within GFF963at 275.158 kb on + strand, within GFF963at 275.158 kb on + strand, within GFF963at 275.158 kb on + strand, within GFF963at 275.158 kb on + strand, within GFF963at 275.158 kb on + strand, within GFF963at 275.158 kb on + strand, within GFF963at 275.158 kb on + strand, within GFF963at 275.159 kb on - strand, within GFF963at 275.159 kb on - strand, within GFF963at 275.159 kb on - strand, within GFF963at 275.159 kb on - strand, within GFF963at 275.159 kb on - strand, within GFF963at 275.159 kb on - strand, within GFF963at 275.159 kb on - strand, within GFF963at 275.159 kb on - strand, within GFF963at 275.185 kb on + strand, within GFF963at 275.185 kb on + strand, within GFF963at 275.185 kb on + strand, within GFF963at 275.185 kb on + strand, within GFF963at 275.185 kb on + strand, within GFF963at 275.186 kb on - strand, within GFF963at 275.186 kb on - strand, within GFF963at 275.186 kb on - strand, within GFF963at 275.186 kb on - strand, within GFF963at 275.186 kb on - strand, within GFF963at 275.186 kb on - strand, within GFF963at 275.186 kb on - strand, within GFF963at 275.186 kb on - strand, within GFF963at 275.272 kb on + strand, within GFF963at 275.272 kb on + strand, within GFF963at 275.272 kb on + strand, within GFF963at 275.272 kb on + strand, within GFF963at 275.272 kb on + strand, within GFF963at 275.272 kb on + strand, within GFF963at 275.272 kb on + strand, within GFF963at 275.272 kb on + strand, within GFF963at 275.273 kb on - strand, within GFF963at 275.273 kb on - strand, within GFF963at 275.273 kb on - strand, within GFF963at 275.273 kb on - strand, within GFF963at 275.273 kb on - strand, within GFF963at 275.273 kb on - strand, within GFF963at 275.273 kb on - strand, within GFF963at 275.273 kb on - strand, within GFF963at 275.276 kb on - strand, within GFF963at 275.470 kb on + strand, within GFF963at 275.470 kb on + strand, within GFF963at 275.470 kb on + strand, within GFF963at 275.470 kb on + strand, within GFF963at 275.470 kb on + strand, within GFF963at 275.470 kb on + strand, within GFF963at 275.470 kb on + strand, within GFF963at 275.470 kb on + strand, within GFF963at 275.470 kb on + strand, within GFF963at 275.470 kb on + strand, within GFF963at 275.470 kb on + strand, within GFF963at 275.471 kb on - strand, within GFF963at 275.471 kb on - strand, within GFF963at 275.471 kb on - strand, within GFF963at 275.471 kb on - strand, within GFF963at 275.471 kb on - strand, within GFF963at 275.471 kb on - strand, within GFF963at 275.471 kb on - strand, within GFF963at 275.471 kb on - strand, within GFF963at 275.471 kb on - strand, within GFF963at 275.471 kb on - strand, within GFF963at 275.480 kb on - strand, within GFF963at 275.480 kb on - strand, within GFF963at 275.543 kb on - strand, within GFF963at 275.543 kb on - strand, within GFF963at 275.543 kb on - strand, within GFF963at 275.717 kb on + strandat 275.718 kb on - strandat 275.814 kb on + strandat 275.814 kb on + strandat 275.814 kb on + strandat 275.814 kb on + strandat 275.814 kb on + strandat 275.814 kb on + strandat 275.814 kb on + strandat 275.814 kb on + strandat 275.815 kb on - strandat 275.815 kb on - strandat 275.815 kb on - strandat 275.815 kb on - strandat 275.815 kb on - strandat 275.815 kb on - strandat 276.683 kb on + strandat 276.735 kb on + strandat 276.736 kb on - strandat 276.736 kb on - strandat 276.736 kb on - strandat 276.736 kb on - strandat 276.736 kb on - strandat 276.736 kb on - strandat 276.736 kb on - strandat 276.742 kb on + strandat 276.742 kb on + strandat 276.742 kb on + strandat 276.742 kb on + strandat 276.742 kb on + strandat 276.742 kb on + strandat 276.742 kb on + strandat 276.742 kb on + strandat 276.743 kb on - strandat 276.743 kb on - strandat 276.743 kb on - strandat 277.235 kb on - strand, within GFF965at 277.280 kb on - strand, within GFF965at 277.343 kb on - strandat 277.343 kb on - strandat 277.380 kb on - strandat 277.380 kb on - strandat 277.380 kb on - strandat 277.397 kb on - strandat 277.397 kb on - strandat 277.397 kb on - strandat 277.397 kb on - strandat 277.400 kb on + strandat 277.471 kb on - strandat 277.471 kb on - strandat 277.471 kb on - strandat 277.576 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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274,813 + GFF963 0.52 +0.4
274,813 + GFF963 0.52 -0.0
274,813 + GFF963 0.52 +0.1
274,813 + GFF963 0.52 -0.1
274,813 + GFF963 0.52 -1.0
274,813 + GFF963 0.52 -0.4
274,813 + GFF963 0.52 -2.3
274,813 + GFF963 0.52 -0.3
274,813 + GFF963 0.52 -0.2
274,813 + GFF963 0.52 +0.2
274,813 + GFF963 0.52 -0.9
274,813 + GFF963 0.52 +0.9
274,813 + GFF963 0.52 -0.8
274,813 + GFF963 0.52 -0.1
274,813 + GFF963 0.52 +1.1
274,813 + GFF963 0.52 -0.3
274,813 + GFF963 0.52 +0.4
274,813 + GFF963 0.52 +1.4
274,813 + GFF963 0.52 -0.1
274,813 + GFF963 0.52 -0.2
274,814 - GFF963 0.52 -0.5
274,814 - GFF963 0.52 -2.2
274,814 - GFF963 0.52 +0.7
274,814 - GFF963 0.52 -1.4
274,814 - GFF963 0.52 +0.2
274,814 - GFF963 0.52 -0.1
274,814 - GFF963 0.52 +0.6
274,814 - GFF963 0.52 -0.2
274,814 - GFF963 0.52 -1.5
274,814 - GFF963 0.52 +0.8
274,814 - GFF963 0.52 -0.9
274,814 - GFF963 0.52 -1.2
274,814 - GFF963 0.52 +0.3
274,814 - GFF963 0.52 -0.6
274,814 - GFF963 0.52 -1.4
274,814 - GFF963 0.52 +0.2
274,814 - GFF963 0.52 -0.1
274,814 - GFF963 0.52 -0.9
274,897 + GFF963 0.56 -0.0
274,996 + GFF963 0.61 +0.0
274,996 + GFF963 0.61 +0.1
274,996 + GFF963 0.61 -0.4
274,997 - GFF963 0.61 +0.3
275,098 + GFF963 0.66 +0.0
275,098 + GFF963 0.66 -0.2
275,099 - GFF963 0.66 -0.5
275,099 - GFF963 0.66 +0.1
275,099 - GFF963 0.66 -0.1
275,099 - GFF963 0.66 -1.2
275,099 - GFF963 0.66 +0.5
275,107 + GFF963 0.66 +0.7
275,107 + GFF963 0.66 -0.4
275,108 - GFF963 0.66 -0.2
275,108 - GFF963 0.66 -0.5
275,158 + GFF963 0.69 +0.7
275,158 + GFF963 0.69 -0.4
275,158 + GFF963 0.69 -0.2
275,158 + GFF963 0.69 +0.2
275,158 + GFF963 0.69 -0.3
275,158 + GFF963 0.69 -0.6
275,158 + GFF963 0.69 +0.2
275,158 + GFF963 0.69 -0.7
275,159 - GFF963 0.69 -0.2
275,159 - GFF963 0.69 +0.2
275,159 - GFF963 0.69 -0.2
275,159 - GFF963 0.69 +1.2
275,159 - GFF963 0.69 +0.1
275,159 - GFF963 0.69 +0.2
275,159 - GFF963 0.69 -0.0
275,159 - GFF963 0.69 -0.6
275,185 + GFF963 0.70 -0.6
275,185 + GFF963 0.70 -0.4
275,185 + GFF963 0.70 -0.0
275,185 + GFF963 0.70 +0.3
275,185 + GFF963 0.70 -0.8
275,186 - GFF963 0.70 -0.4
275,186 - GFF963 0.70 +0.5
275,186 - GFF963 0.70 +1.8
275,186 - GFF963 0.70 -0.6
275,186 - GFF963 0.70 -0.8
275,186 - GFF963 0.70 -1.0
275,186 - GFF963 0.70 +0.9
275,186 - GFF963 0.70 -1.2
275,272 + GFF963 0.74 -1.0
275,272 + GFF963 0.74 +1.7
275,272 + GFF963 0.74 -0.2
275,272 + GFF963 0.74 +0.7
275,272 + GFF963 0.74 +0.3
275,272 + GFF963 0.74 -0.6
275,272 + GFF963 0.74 -0.3
275,272 + GFF963 0.74 +0.3
275,273 - GFF963 0.74 +0.0
275,273 - GFF963 0.74 +1.0
275,273 - GFF963 0.74 -1.8
275,273 - GFF963 0.74 +0.3
275,273 - GFF963 0.74 -0.4
275,273 - GFF963 0.74 -0.4
275,273 - GFF963 0.74 -1.4
275,273 - GFF963 0.74 +0.2
275,276 - GFF963 0.74 +0.6
275,470 + GFF963 0.84 +0.0
275,470 + GFF963 0.84 +0.5
275,470 + GFF963 0.84 +0.1
275,470 + GFF963 0.84 +0.2
275,470 + GFF963 0.84 +0.4
275,470 + GFF963 0.84 -1.4
275,470 + GFF963 0.84 -0.8
275,470 + GFF963 0.84 -2.2
275,470 + GFF963 0.84 -0.2
275,470 + GFF963 0.84 +0.1
275,470 + GFF963 0.84 -0.3
275,471 - GFF963 0.84 -1.4
275,471 - GFF963 0.84 -0.1
275,471 - GFF963 0.84 -0.7
275,471 - GFF963 0.84 +0.0
275,471 - GFF963 0.84 +0.4
275,471 - GFF963 0.84 +2.7
275,471 - GFF963 0.84 -0.6
275,471 - GFF963 0.84 +0.2
275,471 - GFF963 0.84 -0.2
275,471 - GFF963 0.84 +0.1
275,480 - GFF963 0.84 -0.6
275,480 - GFF963 0.84 -0.1
275,543 - GFF963 0.87 -0.6
275,543 - GFF963 0.87 +0.5
275,543 - GFF963 0.87 +1.0
275,717 + -0.9
275,718 - +0.2
275,814 + -0.0
275,814 + -0.4
275,814 + -1.0
275,814 + -0.1
275,814 + -0.9
275,814 + -0.7
275,814 + -0.1
275,814 + -0.4
275,815 - -0.1
275,815 - -1.0
275,815 - -0.1
275,815 - -0.2
275,815 - -0.8
275,815 - -0.9
276,683 + +1.9
276,735 + -1.0
276,736 - +0.2
276,736 - +0.1
276,736 - +0.7
276,736 - -0.6
276,736 - -0.1
276,736 - -0.4
276,736 - -0.2
276,742 + +0.3
276,742 + -0.1
276,742 + +0.9
276,742 + +0.5
276,742 + +0.5
276,742 + +0.8
276,742 + -0.8
276,742 + +1.0
276,743 - -0.1
276,743 - +0.2
276,743 - -0.3
277,235 - GFF965 0.78 -1.2
277,280 - GFF965 0.85 +1.4
277,343 - -2.3
277,343 - +0.4
277,380 - +3.7
277,380 - -1.2
277,380 - -1.2
277,397 - -1.4
277,397 - -1.0
277,397 - +0.1
277,397 - -0.6
277,400 + +0.4
277,471 - -0.6
277,471 - -1.6
277,471 - -1.4
277,576 - -2.2

Or see this region's nucleotide sequence