Strain Fitness in Variovorax sp. SCN45 around GFF953

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF951 and GFF952 are separated by 6 nucleotidesGFF952 and GFF953 overlap by 1 nucleotidesGFF953 and GFF954 are separated by 193 nucleotidesGFF954 and GFF955 are separated by 32 nucleotides GFF951 - Chaperone protein HscA, at 264,369 to 266,234 GFF951 GFF952 - Ferredoxin, 2Fe-2S, at 266,241 to 266,579 GFF952 GFF953 - DNA polymerase III epsilon subunit (EC 2.7.7.7), at 266,579 to 267,301 GFF953 GFF954 - hypothetical protein, at 267,495 to 267,839 GFF954 GFF955 - N-acetylmuramoyl-L-alanine amidase, family 2, at 267,872 to 268,474 GFF955 Position (kb) 266 267 268Strain fitness (log2 ratio) -2 -1 0 1 2at 266.232 kb on + strandat 266.232 kb on + strandat 266.232 kb on + strandat 267.244 kb on + strandat 267.244 kb on + strandat 267.244 kb on + strandat 267.328 kb on + strandat 267.497 kb on - strandat 267.497 kb on - strandat 267.497 kb on - strandat 267.527 kb on + strandat 267.528 kb on - strandat 267.528 kb on - strandat 267.541 kb on + strand, within GFF954at 267.541 kb on + strand, within GFF954at 267.542 kb on - strand, within GFF954at 267.542 kb on - strand, within GFF954at 267.542 kb on - strand, within GFF954at 267.542 kb on - strand, within GFF954at 267.542 kb on - strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.638 kb on - strand, within GFF954at 267.638 kb on - strand, within GFF954at 267.638 kb on - strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.787 kb on + strand, within GFF954at 267.787 kb on + strand, within GFF954at 267.787 kb on + strand, within GFF954at 267.787 kb on + strand, within GFF954at 267.787 kb on + strand, within GFF954at 267.787 kb on + strand, within GFF954at 267.788 kb on - strand, within GFF954at 267.788 kb on - strand, within GFF954at 267.873 kb on + strandat 267.873 kb on + strandat 267.874 kb on - strandat 267.874 kb on - strandat 267.874 kb on - strandat 267.874 kb on - strandat 267.874 kb on - strandat 267.874 kb on - strandat 267.882 kb on - strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.913 kb on - strandat 267.913 kb on - strandat 267.913 kb on - strandat 267.913 kb on - strandat 267.913 kb on - strandat 267.913 kb on - strandat 267.933 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.024 kb on - strand, within GFF955at 268.024 kb on - strand, within GFF955at 268.024 kb on - strand, within GFF955at 268.024 kb on - strand, within GFF955at 268.024 kb on - strand, within GFF955at 268.024 kb on - strand, within GFF955at 268.087 kb on - strand, within GFF955at 268.194 kb on - strand, within GFF955at 268.239 kb on + strand, within GFF955at 268.239 kb on + strand, within GFF955at 268.239 kb on + strand, within GFF955at 268.239 kb on + strand, within GFF955at 268.240 kb on - strand, within GFF955at 268.240 kb on - strand, within GFF955at 268.240 kb on - strand, within GFF955at 268.251 kb on + strand, within GFF955at 268.251 kb on + strand, within GFF955at 268.251 kb on + strand, within GFF955at 268.251 kb on + strand, within GFF955at 268.251 kb on + strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.269 kb on + strand, within GFF955at 268.269 kb on + strand, within GFF955at 268.269 kb on + strand, within GFF955at 268.269 kb on + strand, within GFF955at 268.269 kb on + strand, within GFF955at 268.269 kb on + strand, within GFF955at 268.270 kb on - strand, within GFF955at 268.270 kb on - strand, within GFF955at 268.270 kb on - strand, within GFF955at 268.270 kb on - strand, within GFF955at 268.270 kb on - strand, within GFF955at 268.270 kb on - strand, within GFF955

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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266,232 + +1.0
266,232 + -1.4
266,232 + -0.7
267,244 + +0.0
267,244 + +0.1
267,244 + -0.2
267,328 + -0.0
267,497 - -0.6
267,497 - +0.5
267,497 - +2.0
267,527 + +0.0
267,528 - +0.4
267,528 - -0.2
267,541 + GFF954 0.13 -0.7
267,541 + GFF954 0.13 -2.5
267,542 - GFF954 0.14 +1.6
267,542 - GFF954 0.14 -0.3
267,542 - GFF954 0.14 -0.5
267,542 - GFF954 0.14 +0.3
267,542 - GFF954 0.14 +0.2
267,637 + GFF954 0.41 +1.0
267,637 + GFF954 0.41 +0.3
267,637 + GFF954 0.41 -1.2
267,637 + GFF954 0.41 -1.3
267,637 + GFF954 0.41 +1.4
267,637 + GFF954 0.41 +0.0
267,637 + GFF954 0.41 +0.3
267,637 + GFF954 0.41 +0.4
267,637 + GFF954 0.41 -0.1
267,637 + GFF954 0.41 +0.1
267,638 - GFF954 0.41 -0.2
267,638 - GFF954 0.41 +0.6
267,638 - GFF954 0.41 +0.1
267,655 + GFF954 0.46 +0.6
267,655 + GFF954 0.46 -0.7
267,655 + GFF954 0.46 -0.1
267,655 + GFF954 0.46 +0.5
267,655 + GFF954 0.46 -1.4
267,655 + GFF954 0.46 +0.4
267,655 + GFF954 0.46 +0.2
267,655 + GFF954 0.46 -1.0
267,655 + GFF954 0.46 -0.6
267,655 + GFF954 0.46 +0.6
267,656 - GFF954 0.47 +0.2
267,656 - GFF954 0.47 +0.0
267,656 - GFF954 0.47 -0.2
267,656 - GFF954 0.47 -0.2
267,656 - GFF954 0.47 -0.9
267,656 - GFF954 0.47 -0.7
267,656 - GFF954 0.47 -1.7
267,656 - GFF954 0.47 -0.6
267,656 - GFF954 0.47 -1.4
267,656 - GFF954 0.47 +0.0
267,656 - GFF954 0.47 +0.0
267,656 - GFF954 0.47 +1.0
267,656 - GFF954 0.47 -0.3
267,656 - GFF954 0.47 -0.2
267,676 + GFF954 0.52 -0.0
267,676 + GFF954 0.52 -0.4
267,676 + GFF954 0.52 -1.0
267,676 + GFF954 0.52 -0.5
267,676 + GFF954 0.52 -0.5
267,676 + GFF954 0.52 -0.7
267,676 + GFF954 0.52 +0.3
267,676 + GFF954 0.52 -1.0
267,676 + GFF954 0.52 -0.3
267,676 + GFF954 0.52 +0.9
267,676 + GFF954 0.52 -0.3
267,677 - GFF954 0.53 -0.7
267,677 - GFF954 0.53 +1.0
267,677 - GFF954 0.53 +0.1
267,677 - GFF954 0.53 +0.9
267,677 - GFF954 0.53 +0.2
267,677 - GFF954 0.53 -2.2
267,677 - GFF954 0.53 +0.6
267,677 - GFF954 0.53 -0.8
267,677 - GFF954 0.53 -0.0
267,677 - GFF954 0.53 +0.8
267,787 + GFF954 0.85 +1.4
267,787 + GFF954 0.85 +0.2
267,787 + GFF954 0.85 -1.7
267,787 + GFF954 0.85 -0.2
267,787 + GFF954 0.85 -0.3
267,787 + GFF954 0.85 +1.8
267,788 - GFF954 0.85 -0.4
267,788 - GFF954 0.85 -0.3
267,873 + -1.0
267,873 + +0.2
267,874 - +0.3
267,874 - -1.3
267,874 - +0.8
267,874 - +0.4
267,874 - -0.3
267,874 - +2.4
267,882 - +1.5
267,912 + +0.4
267,912 + +0.2
267,912 + -0.7
267,912 + -2.3
267,912 + -0.1
267,912 + +0.8
267,912 + -0.2
267,912 + -0.6
267,912 + -1.7
267,912 + -1.3
267,912 + +1.4
267,913 - -0.5
267,913 - -0.4
267,913 - +0.1
267,913 - +0.7
267,913 - -0.5
267,913 - +2.0
267,933 + GFF955 0.10 +1.4
267,966 + GFF955 0.16 +0.8
267,966 + GFF955 0.16 -1.3
267,966 + GFF955 0.16 +0.9
267,966 + GFF955 0.16 +0.8
267,966 + GFF955 0.16 -0.8
267,966 + GFF955 0.16 -0.1
267,966 + GFF955 0.16 -0.8
267,966 + GFF955 0.16 -0.1
267,966 + GFF955 0.16 -0.9
267,966 + GFF955 0.16 -1.5
267,966 + GFF955 0.16 +0.1
267,966 + GFF955 0.16 +0.1
267,966 + GFF955 0.16 -0.0
267,966 + GFF955 0.16 -0.1
267,966 + GFF955 0.16 -1.3
267,967 - GFF955 0.16 -0.3
267,967 - GFF955 0.16 -1.0
267,967 - GFF955 0.16 -1.3
267,967 - GFF955 0.16 +0.1
267,967 - GFF955 0.16 -0.4
267,967 - GFF955 0.16 +0.8
267,967 - GFF955 0.16 -0.4
267,967 - GFF955 0.16 -1.2
268,023 + GFF955 0.25 +0.1
268,023 + GFF955 0.25 -0.2
268,023 + GFF955 0.25 -0.4
268,023 + GFF955 0.25 +1.4
268,023 + GFF955 0.25 +0.9
268,023 + GFF955 0.25 -0.5
268,023 + GFF955 0.25 +0.1
268,023 + GFF955 0.25 -0.3
268,024 - GFF955 0.25 -1.1
268,024 - GFF955 0.25 -0.4
268,024 - GFF955 0.25 +1.1
268,024 - GFF955 0.25 +0.1
268,024 - GFF955 0.25 -1.1
268,024 - GFF955 0.25 -0.1
268,087 - GFF955 0.36 -0.2
268,194 - GFF955 0.53 +0.7
268,239 + GFF955 0.61 +0.4
268,239 + GFF955 0.61 -0.6
268,239 + GFF955 0.61 +0.1
268,239 + GFF955 0.61 -0.3
268,240 - GFF955 0.61 -0.4
268,240 - GFF955 0.61 +0.1
268,240 - GFF955 0.61 -0.5
268,251 + GFF955 0.63 +0.0
268,251 + GFF955 0.63 -1.1
268,251 + GFF955 0.63 +0.0
268,251 + GFF955 0.63 -0.4
268,251 + GFF955 0.63 -0.4
268,252 - GFF955 0.63 +0.1
268,252 - GFF955 0.63 +0.4
268,252 - GFF955 0.63 -0.3
268,252 - GFF955 0.63 -0.9
268,252 - GFF955 0.63 -0.2
268,252 - GFF955 0.63 +0.2
268,252 - GFF955 0.63 +1.9
268,252 - GFF955 0.63 -0.7
268,269 + GFF955 0.66 +0.5
268,269 + GFF955 0.66 +0.9
268,269 + GFF955 0.66 -0.7
268,269 + GFF955 0.66 +0.3
268,269 + GFF955 0.66 +0.0
268,269 + GFF955 0.66 -0.1
268,270 - GFF955 0.66 -0.1
268,270 - GFF955 0.66 +0.4
268,270 - GFF955 0.66 +0.2
268,270 - GFF955 0.66 -0.8
268,270 - GFF955 0.66 +0.5
268,270 - GFF955 0.66 +0.0

Or see this region's nucleotide sequence