Strain Fitness in Variovorax sp. SCN45 around GFF94

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
107,621	+				-0.2
107,622	-				+0.7
107,684	+		GFF92	0.17	-1.8
107,684	+		GFF92	0.17	+0.3
107,684	+		GFF92	0.17	+0.2
107,684	+		GFF92	0.17	-0.2
107,685	-		GFF92	0.17	+0.6
107,685	-		GFF92	0.17	-0.6
108,013	+				-0.4
108,014	-				-1.3
108,014	-				-0.5
108,497	+				-0.2
108,498	-				-0.6
108,498	-				+1.1
108,498	-				+0.5
108,498	-				+1.0
108,558	-				+0.9
108,633	+				-0.4
108,633	+				-0.6
108,633	+				-0.6
108,634	-				+0.3
109,067	-				-0.5
109,224	+		GFF95	0.25	-0.8
109,336	+		GFF95	0.42	-0.0
109,336	+		GFF95	0.42	+0.4
109,336	+		GFF95	0.42	+0.0
109,336	+		GFF95	0.42	-0.4
109,337	-		GFF95	0.43	-0.1
109,378	+		GFF95	0.49	-1.0
109,378	+		GFF95	0.49	-1.1
109,378	+		GFF95	0.49	+0.0
109,378	+		GFF95	0.49	-0.4
109,378	+		GFF95	0.49	-0.1
109,378	+		GFF95	0.49	-0.6