Strain Fitness in Variovorax sp. SCN45 around GFF873

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF871 and GFF872 overlap by 4 nucleotidesGFF872 and GFF873 overlap by 4 nucleotidesGFF873 and GFF874 overlap by 4 nucleotides GFF871 - Vitamin B12 ABC transporter, substrate-binding protein BtuF, at 180,538 to 181,431 GFF871 GFF872 - Hemin ABC transporter, permease protein, at 181,428 to 182,420 GFF872 GFF873 - KEGG: iron complex transport system ATP-binding protein , at 182,417 to 183,151 GFF873 GFF874 - no description, at 183,148 to 184,188 GFF874 Position (kb) 182 183 184Strain fitness (log2 ratio) -1 0 1at 181.688 kb on + strand, within GFF872at 181.689 kb on + strand, within GFF872at 181.690 kb on - strand, within GFF872at 181.929 kb on + strand, within GFF872at 182.446 kb on - strandat 182.446 kb on - strandat 182.446 kb on - strandat 182.664 kb on - strand, within GFF873at 183.084 kb on - strandat 183.084 kb on - strandat 183.317 kb on - strand, within GFF874at 183.673 kb on + strand, within GFF874at 183.674 kb on - strand, within GFF874at 183.674 kb on - strand, within GFF874at 183.850 kb on + strand, within GFF874at 183.850 kb on + strand, within GFF874at 183.851 kb on - strand, within GFF874at 183.851 kb on - strand, within GFF874at 183.917 kb on - strand, within GFF874

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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181,688 + GFF872 0.26 -0.4
181,689 + GFF872 0.26 -0.2
181,690 - GFF872 0.26 +1.4
181,929 + GFF872 0.50 -0.9
182,446 - -0.0
182,446 - +0.1
182,446 - -0.2
182,664 - GFF873 0.34 -0.2
183,084 - +0.4
183,084 - -0.0
183,317 - GFF874 0.16 -0.5
183,673 + GFF874 0.50 -0.1
183,674 - GFF874 0.51 -0.9
183,674 - GFF874 0.51 -0.0
183,850 + GFF874 0.67 -1.2
183,850 + GFF874 0.67 +0.9
183,851 - GFF874 0.68 -0.9
183,851 - GFF874 0.68 -0.2
183,917 - GFF874 0.74 -0.2

Or see this region's nucleotide sequence