Strain Fitness in Variovorax sp. SCN45 around GFF817

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF816 and GFF817 overlap by 4 nucleotidesGFF817 and GFF818 are separated by 32 nucleotides GFF816 - L-carnitine dehydratase/bile acid-inducible protein F, at 121,303 to 122,484 GFF816 GFF817 - Similar to citrate lyase beta chain, 3, at 122,481 to 123,359 GFF817 GFF818 - BUG/TctC family periplasmic protein, at 123,392 to 124,402 GFF818 Position (kb) 122 123 124Strain fitness (log2 ratio) -3 -2 -1 0 1at 121.678 kb on + strand, within GFF816at 121.679 kb on - strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.825 kb on + strand, within GFF816at 121.825 kb on + strand, within GFF816at 121.825 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.942 kb on + strand, within GFF816at 121.942 kb on + strand, within GFF816at 121.943 kb on - strand, within GFF816at 121.943 kb on - strand, within GFF816at 121.993 kb on + strand, within GFF816at 121.993 kb on + strand, within GFF816at 121.994 kb on - strand, within GFF816at 121.994 kb on - strand, within GFF816at 121.994 kb on - strand, within GFF816at 121.994 kb on - strand, within GFF816at 121.994 kb on - strand, within GFF816at 121.999 kb on + strand, within GFF816at 122.000 kb on - strand, within GFF816at 122.375 kb on - strandat 123.366 kb on + strandat 123.366 kb on + strandat 123.366 kb on + strandat 123.367 kb on - strandat 123.367 kb on - strandat 123.367 kb on - strandat 123.367 kb on - strandat 123.367 kb on - strandat 123.367 kb on - strandat 123.367 kb on - strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.530 kb on + strand, within GFF818at 123.530 kb on + strand, within GFF818at 123.530 kb on + strand, within GFF818at 123.680 kb on + strand, within GFF818at 123.680 kb on + strand, within GFF818at 123.680 kb on + strand, within GFF818at 123.680 kb on + strand, within GFF818at 123.681 kb on - strand, within GFF818at 123.681 kb on - strand, within GFF818at 123.728 kb on + strand, within GFF818at 123.728 kb on + strand, within GFF818at 123.728 kb on + strand, within GFF818at 123.729 kb on - strand, within GFF818at 123.743 kb on + strand, within GFF818at 123.743 kb on + strand, within GFF818at 123.743 kb on + strand, within GFF818at 123.743 kb on + strand, within GFF818at 123.744 kb on - strand, within GFF818at 123.744 kb on - strand, within GFF818at 123.767 kb on + strand, within GFF818at 123.767 kb on + strand, within GFF818at 123.768 kb on - strand, within GFF818at 123.768 kb on - strand, within GFF818at 123.768 kb on - strand, within GFF818at 123.768 kb on - strand, within GFF818at 123.833 kb on + strand, within GFF818at 123.834 kb on - strand, within GFF818at 123.834 kb on - strand, within GFF818at 123.851 kb on + strand, within GFF818at 123.851 kb on + strand, within GFF818at 123.851 kb on + strand, within GFF818at 123.851 kb on + strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.852 kb on - strand, within GFF818at 123.968 kb on + strand, within GFF818at 123.969 kb on - strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.184 kb on + strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818at 124.185 kb on - strand, within GFF818

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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121,678 + GFF816 0.32 -0.3
121,679 - GFF816 0.32 -1.0
121,714 + GFF816 0.35 +0.4
121,714 + GFF816 0.35 +1.0
121,714 + GFF816 0.35 +0.1
121,714 + GFF816 0.35 +1.0
121,714 + GFF816 0.35 -1.1
121,714 + GFF816 0.35 -0.6
121,714 + GFF816 0.35 +0.4
121,714 + GFF816 0.35 +0.1
121,714 + GFF816 0.35 +0.4
121,714 + GFF816 0.35 -0.3
121,714 + GFF816 0.35 -0.7
121,714 + GFF816 0.35 -0.9
121,714 + GFF816 0.35 -1.8
121,714 + GFF816 0.35 -0.4
121,714 + GFF816 0.35 -0.6
121,715 - GFF816 0.35 +0.4
121,715 - GFF816 0.35 +0.7
121,715 - GFF816 0.35 +0.1
121,715 - GFF816 0.35 +0.1
121,715 - GFF816 0.35 +0.5
121,715 - GFF816 0.35 -0.1
121,715 - GFF816 0.35 -0.3
121,819 + GFF816 0.44 +0.5
121,819 + GFF816 0.44 -0.2
121,819 + GFF816 0.44 -0.2
121,819 + GFF816 0.44 -0.0
121,819 + GFF816 0.44 -0.4
121,819 + GFF816 0.44 +0.0
121,819 + GFF816 0.44 -2.8
121,819 + GFF816 0.44 -0.1
121,819 + GFF816 0.44 -0.9
121,819 + GFF816 0.44 -0.9
121,819 + GFF816 0.44 -0.2
121,819 + GFF816 0.44 -0.3
121,819 + GFF816 0.44 +0.1
121,819 + GFF816 0.44 +0.6
121,819 + GFF816 0.44 -0.2
121,819 + GFF816 0.44 -1.8
121,819 + GFF816 0.44 -0.3
121,819 + GFF816 0.44 -0.3
121,819 + GFF816 0.44 +0.4
121,819 + GFF816 0.44 -0.0
121,819 + GFF816 0.44 -0.3
121,819 + GFF816 0.44 -0.9
121,819 + GFF816 0.44 -0.9
121,820 - GFF816 0.44 +0.4
121,820 - GFF816 0.44 +0.1
121,820 - GFF816 0.44 -1.3
121,820 - GFF816 0.44 -1.6
121,820 - GFF816 0.44 +0.4
121,820 - GFF816 0.44 +0.4
121,820 - GFF816 0.44 -3.5
121,820 - GFF816 0.44 +0.4
121,820 - GFF816 0.44 +0.7
121,820 - GFF816 0.44 +0.2
121,820 - GFF816 0.44 -0.4
121,820 - GFF816 0.44 +0.2
121,820 - GFF816 0.44 +1.0
121,820 - GFF816 0.44 -0.1
121,825 + GFF816 0.44 -1.2
121,825 + GFF816 0.44 -0.1
121,825 + GFF816 0.44 -1.3
121,933 + GFF816 0.53 -0.7
121,933 + GFF816 0.53 +1.0
121,933 + GFF816 0.53 -0.1
121,933 + GFF816 0.53 -0.8
121,933 + GFF816 0.53 +0.1
121,933 + GFF816 0.53 -0.6
121,933 + GFF816 0.53 +0.5
121,934 - GFF816 0.53 -0.4
121,934 - GFF816 0.53 -0.5
121,934 - GFF816 0.53 -0.4
121,934 - GFF816 0.53 -0.1
121,934 - GFF816 0.53 -3.0
121,934 - GFF816 0.53 +0.1
121,934 - GFF816 0.53 +0.5
121,934 - GFF816 0.53 -0.2
121,934 - GFF816 0.53 -1.6
121,934 - GFF816 0.53 -0.8
121,934 - GFF816 0.53 -0.6
121,934 - GFF816 0.53 -0.6
121,934 - GFF816 0.53 -1.6
121,936 + GFF816 0.54 +1.0
121,936 + GFF816 0.54 -0.2
121,936 + GFF816 0.54 +1.0
121,936 + GFF816 0.54 +0.1
121,936 + GFF816 0.54 +0.6
121,936 + GFF816 0.54 +1.5
121,936 + GFF816 0.54 -2.4
121,936 + GFF816 0.54 -1.4
121,936 + GFF816 0.54 -1.1
121,937 - GFF816 0.54 +1.4
121,937 - GFF816 0.54 +0.1
121,937 - GFF816 0.54 -0.9
121,937 - GFF816 0.54 +0.2
121,937 - GFF816 0.54 -1.8
121,937 - GFF816 0.54 -0.0
121,937 - GFF816 0.54 -0.4
121,942 + GFF816 0.54 -0.3
121,942 + GFF816 0.54 -1.1
121,943 - GFF816 0.54 +0.0
121,943 - GFF816 0.54 +0.5
121,993 + GFF816 0.58 -0.5
121,993 + GFF816 0.58 +0.2
121,994 - GFF816 0.58 -0.7
121,994 - GFF816 0.58 +1.2
121,994 - GFF816 0.58 +0.4
121,994 - GFF816 0.58 -1.4
121,994 - GFF816 0.58 +0.6
121,999 + GFF816 0.59 -0.7
122,000 - GFF816 0.59 -0.8
122,375 - +0.2
123,366 + -0.0
123,366 + -0.8
123,366 + +0.3
123,367 - -1.6
123,367 - -0.9
123,367 - +0.3
123,367 - -0.6
123,367 - -0.0
123,367 - -0.1
123,367 - +0.4
123,378 + +0.4
123,378 + -0.5
123,378 + -1.2
123,378 + +0.0
123,378 + -0.7
123,378 + -0.5
123,378 + -1.6
123,378 + -0.1
123,379 - -1.7
123,379 - -1.2
123,379 - +0.0
123,379 - -0.5
123,379 - -0.0
123,379 - -0.1
123,379 - +1.7
123,379 - -0.5
123,379 - -0.7
123,379 - -1.1
123,379 - +0.2
123,379 - -0.3
123,379 - -0.9
123,379 - -0.0
123,530 + GFF818 0.14 -0.4
123,530 + GFF818 0.14 -0.1
123,530 + GFF818 0.14 -0.2
123,680 + GFF818 0.28 -0.9
123,680 + GFF818 0.28 -0.4
123,680 + GFF818 0.28 +0.6
123,680 + GFF818 0.28 -0.9
123,681 - GFF818 0.29 -1.6
123,681 - GFF818 0.29 -0.7
123,728 + GFF818 0.33 -1.1
123,728 + GFF818 0.33 -0.2
123,728 + GFF818 0.33 -0.2
123,729 - GFF818 0.33 -0.3
123,743 + GFF818 0.35 -0.5
123,743 + GFF818 0.35 -0.1
123,743 + GFF818 0.35 -0.1
123,743 + GFF818 0.35 +0.4
123,744 - GFF818 0.35 +0.4
123,744 - GFF818 0.35 +0.5
123,767 + GFF818 0.37 -0.0
123,767 + GFF818 0.37 +1.1
123,768 - GFF818 0.37 -0.2
123,768 - GFF818 0.37 -0.9
123,768 - GFF818 0.37 -1.2
123,768 - GFF818 0.37 -0.5
123,833 + GFF818 0.44 +0.7
123,834 - GFF818 0.44 +0.1
123,834 - GFF818 0.44 +0.9
123,851 + GFF818 0.45 -0.2
123,851 + GFF818 0.45 -0.1
123,851 + GFF818 0.45 +0.4
123,851 + GFF818 0.45 +0.6
123,852 - GFF818 0.45 -0.2
123,852 - GFF818 0.45 +0.8
123,852 - GFF818 0.45 +0.4
123,852 - GFF818 0.45 -0.1
123,852 - GFF818 0.45 -1.1
123,852 - GFF818 0.45 -0.1
123,852 - GFF818 0.45 -0.3
123,852 - GFF818 0.45 -0.9
123,852 - GFF818 0.45 -0.5
123,852 - GFF818 0.45 +0.1
123,968 + GFF818 0.57 -0.1
123,969 - GFF818 0.57 -0.0
124,184 + GFF818 0.78 -3.1
124,184 + GFF818 0.78 +0.0
124,184 + GFF818 0.78 +1.0
124,184 + GFF818 0.78 -0.5
124,184 + GFF818 0.78 -2.1
124,184 + GFF818 0.78 -0.6
124,184 + GFF818 0.78 +0.8
124,184 + GFF818 0.78 -0.9
124,184 + GFF818 0.78 -0.0
124,184 + GFF818 0.78 -0.7
124,184 + GFF818 0.78 -0.3
124,185 - GFF818 0.78 -0.7
124,185 - GFF818 0.78 +0.0
124,185 - GFF818 0.78 +0.3
124,185 - GFF818 0.78 +0.1
124,185 - GFF818 0.78 -0.6
124,185 - GFF818 0.78 -1.3
124,185 - GFF818 0.78 -1.5
124,185 - GFF818 0.78 -0.5
124,185 - GFF818 0.78 +0.1
124,185 - GFF818 0.78 -0.3
124,185 - GFF818 0.78 -1.0
124,185 - GFF818 0.78 -0.2

Or see this region's nucleotide sequence