Strain Fitness in Variovorax sp. SCN45 around GFF758

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
20,656	-		GFF756	0.62	-0.6
20,656	-		GFF756	0.62	-0.9
20,677	+		GFF756	0.76	+0.3
20,677	+		GFF756	0.76	+0.4
20,677	+		GFF756	0.76	+0.0
20,677	+		GFF756	0.76	-0.7
20,677	+		GFF756	0.76	-0.7
20,677	+		GFF756	0.76	-0.5
20,677	+		GFF756	0.76	+0.1
20,677	+		GFF756	0.76	-1.4
20,677	+		GFF756	0.76	-0.8
20,677	+		GFF756	0.76	+0.1
20,677	+		GFF756	0.76	+0.6
20,677	+		GFF756	0.76	-0.8
20,677	+		GFF756	0.76	-1.4
20,677	+		GFF756	0.76	-0.6
20,677	+		GFF756	0.76	-0.2
20,678	-		GFF756	0.77	-0.4
20,678	-		GFF756	0.77	+0.2
20,678	-		GFF756	0.77	-0.1
20,678	-		GFF756	0.77	-0.2
20,678	-		GFF756	0.77	-0.9
20,678	-		GFF756	0.77	-0.3
20,678	-		GFF756	0.77	-1.0
20,678	-		GFF756	0.77	+0.7
20,678	-		GFF756	0.77	-0.8
20,678	-		GFF756	0.77	-0.4
20,678	-		GFF756	0.77	-1.2
20,681	+		GFF756	0.79	-1.9
20,681	+		GFF756	0.79	+1.4
20,681	+		GFF756	0.79	+0.3
20,681	+		GFF756	0.79	-0.2
20,681	+		GFF756	0.79	-0.4
20,681	+		GFF756	0.79	-0.3
20,681	+		GFF756	0.79	+0.4
20,681	+		GFF756	0.79	+0.0
20,681	+		GFF756	0.79	+0.4
20,682	-		GFF756	0.80	-0.3
20,682	-		GFF756	0.80	+0.8
20,682	-		GFF756	0.80	+0.4
20,682	-		GFF756	0.80	+1.1
20,682	-		GFF756	0.80	-0.3
20,682	-		GFF756	0.80	-0.2
20,682	-		GFF756	0.80	-0.9
20,682	-		GFF756	0.80	-0.6
20,682	-		GFF756	0.80	+0.1
20,682	-		GFF756	0.80	-1.0
20,682	-		GFF756	0.80	+0.7
20,682	-		GFF756	0.80	+0.0
20,778	+				+0.1
20,778	+				-1.2
20,778	+				-0.7
20,778	+				-0.3
20,779	-				-0.2
20,779	-				+0.3
20,779	-				-0.1
20,779	-				+0.4
20,779	-				+0.1
20,779	-				-0.2
20,779	-				-0.4
21,059	+		GFF757	0.42	-0.3
21,059	+		GFF757	0.42	-0.4
21,059	+		GFF757	0.42	-0.2
21,059	+		GFF757	0.42	+0.7
21,059	+		GFF757	0.42	-0.8
21,060	-		GFF757	0.43	-0.2
21,060	-		GFF757	0.43	-0.0
21,236	+		GFF757	0.64	-0.1
21,550	+				-0.5
21,550	+				+0.6
21,550	+				+0.8
21,551	-				-0.1
22,405	+				+0.9
22,405	+				-0.7
22,406	-				-0.2
22,543	+		GFF759	0.12	-0.0
22,564	+		GFF759	0.13	-0.7
22,564	+		GFF759	0.13	-0.4
22,564	+		GFF759	0.13	-0.9
22,564	+		GFF759	0.13	-0.8
22,564	+		GFF759	0.13	-0.3
22,564	+		GFF759	0.13	+1.0
22,564	+		GFF759	0.13	-0.3
22,564	+		GFF759	0.13	-0.3
22,564	+		GFF759	0.13	-0.2
22,564	+		GFF759	0.13	-0.9
22,565	-		GFF759	0.13	-0.1
22,565	-		GFF759	0.13	-1.0
22,565	-		GFF759	0.13	-0.4
22,565	-		GFF759	0.13	+0.4
22,565	-		GFF759	0.13	-0.3
22,565	-		GFF759	0.13	-0.4
22,627	+		GFF759	0.19	-1.6
22,627	+		GFF759	0.19	+1.4
22,627	+		GFF759	0.19	+0.4
22,627	+		GFF759	0.19	-0.4
22,627	+		GFF759	0.19	-0.1
22,628	-		GFF759	0.19	-0.3
22,756	+		GFF759	0.29	-0.0
22,756	+		GFF759	0.29	-0.8
22,756	+		GFF759	0.29	+0.1
22,756	+		GFF759	0.29	+0.4
22,756	+		GFF759	0.29	-0.2
22,756	+		GFF759	0.29	-0.9
22,756	+		GFF759	0.29	+0.6
22,756	+		GFF759	0.29	-0.4
22,757	-		GFF759	0.30	+0.1
22,757	-		GFF759	0.30	-0.3
22,757	-		GFF759	0.30	-0.2
22,757	-		GFF759	0.30	+0.3
22,757	-		GFF759	0.30	+0.0
22,757	-		GFF759	0.30	-0.8
23,320	+		GFF759	0.77	+0.1
23,320	+		GFF759	0.77	+0.1
23,320	+		GFF759	0.77	+0.8
23,321	-		GFF759	0.77	-0.4
23,321	-		GFF759	0.77	+0.1
23,321	-		GFF759	0.77	-0.7
23,354	-		GFF759	0.80	+0.2
23,354	-		GFF759	0.80	-0.2
23,354	-		GFF759	0.80	+0.7
23,354	-		GFF759	0.80	-0.3
23,354	-		GFF759	0.80	+0.2
23,354	-		GFF759	0.80	-0.1
23,359	+		GFF759	0.80	+0.9