Strain Fitness in Variovorax sp. SCN45 around GFF7472

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7472 and GFF7473 are separated by 182 nucleotides GFF7472 - Mobile element protein, at 1 to 423 GFF7472 GFF7473 - Insertion element IS401 (Burkholderia multivorans) transposase, at 606 to 929 GFF7473 Position (kb) 0 1Strain fitness (log2 ratio) -1 0 1at 0.164 kb on + strand, within GFF7472at 0.165 kb on - strand, within GFF7472at 0.413 kb on + strandat 0.413 kb on + strandat 0.493 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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164 + GFF7472 0.39 +0.0
165 - GFF7472 0.39 -0.8
413 + +1.5
413 + +1.2
493 - -0.8

Or see this region's nucleotide sequence