Strain Fitness in Variovorax sp. SCN45 around GFF7457

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
58	+				+0.2
58	+				+0.5
58	+				+0.2
58	+				+0.2
58	+				+0.8
58	+				+0.2
58	+				-0.5
58	+				-0.1
58	+				-0.7
58	+				-0.9
58	+				-0.9
552	+		GFF7457	0.43	-1.6
552	+		GFF7457	0.43	+0.2
553	-		GFF7457	0.43	+0.5
553	-		GFF7457	0.43	-0.2
553	-		GFF7457	0.43	-1.1
572	+		GFF7457	0.45	-0.4
572	+		GFF7457	0.45	+0.5
572	+		GFF7457	0.45	+1.5
573	-		GFF7457	0.45	-0.0
573	-		GFF7457	0.45	-0.5
573	-		GFF7457	0.45	-1.9
573	-		GFF7457	0.45	-0.0
573	-		GFF7457	0.45	-0.8
674	-		GFF7457	0.54	+0.1
698	+		GFF7457	0.57	-2.2
698	+		GFF7457	0.57	-0.4
698	+		GFF7457	0.57	+0.7
698	+		GFF7457	0.57	-0.6
698	+		GFF7457	0.57	+0.3
698	+		GFF7457	0.57	-0.8
698	+		GFF7457	0.57	+0.0
698	+		GFF7457	0.57	-0.3
698	+		GFF7457	0.57	+0.2
699	-		GFF7457	0.57	-0.5
699	-		GFF7457	0.57	-0.3
699	-		GFF7457	0.57	+0.5
699	-		GFF7457	0.57	-0.5
699	-		GFF7457	0.57	-1.2
699	-		GFF7457	0.57	-0.9
699	-		GFF7457	0.57	-0.8
699	-		GFF7457	0.57	+1.5
699	-		GFF7457	0.57	-0.9
699	-		GFF7457	0.57	+0.1
699	-		GFF7457	0.57	+0.7
699	-		GFF7457	0.57	-0.4
699	-		GFF7457	0.57	+0.1
699	-		GFF7457	0.57	+1.0
699	-		GFF7457	0.57	-0.7
866	+		GFF7457	0.72	-0.1
866	+		GFF7457	0.72	-0.1
866	+		GFF7457	0.72	+0.6
866	+		GFF7457	0.72	+0.3
866	+		GFF7457	0.72	+0.3
866	+		GFF7457	0.72	+0.1
866	+		GFF7457	0.72	+0.0
866	+		GFF7457	0.72	+0.6
866	+		GFF7457	0.72	+0.5
866	+		GFF7457	0.72	-0.1
866	+		GFF7457	0.72	+0.4
866	+		GFF7457	0.72	+0.1
866	+		GFF7457	0.72	-1.1
866	+		GFF7457	0.72	+0.3
866	+		GFF7457	0.72	+0.7
867	-		GFF7457	0.72	-0.4
867	-		GFF7457	0.72	+0.3
867	-		GFF7457	0.72	+0.3
867	-		GFF7457	0.72	+0.3
867	-		GFF7457	0.72	-1.3
867	-		GFF7457	0.72	+0.2
867	-		GFF7457	0.72	+0.1
867	-		GFF7457	0.72	-1.4
867	-		GFF7457	0.72	+0.2
867	-		GFF7457	0.72	-0.3
867	-		GFF7457	0.72	-0.9
867	-		GFF7457	0.72	-0.3
867	-		GFF7457	0.72	-0.5
867	-		GFF7457	0.72	-0.2
998	+		GFF7457	0.84	-0.6
998	+		GFF7457	0.84	+0.1
998	+		GFF7457	0.84	+0.5
998	+		GFF7457	0.84	-0.9
998	+		GFF7457	0.84	+0.6
999	-		GFF7457	0.84	-1.9
999	-		GFF7457	0.84	-0.8
999	-		GFF7457	0.84	+0.1
999	-		GFF7457	0.84	-0.0
999	-		GFF7457	0.84	-0.6
999	-		GFF7457	0.84	-0.1
1,055	+		GFF7457	0.90	+0.7
1,055	+		GFF7457	0.90	+0.7
1,055	+		GFF7457	0.90	-0.1