Strain Fitness in Variovorax sp. SCN45 around GFF7448

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
411	-		GFF7448	0.25	-0.6
436	+		GFF7448	0.27	+0.2
506	+		GFF7448	0.31	+0.2
506	+		GFF7448	0.31	-0.3
506	+		GFF7448	0.31	+0.1
506	+		GFF7448	0.31	-0.3
506	+		GFF7448	0.31	-0.6
507	-		GFF7448	0.32	-0.3
507	-		GFF7448	0.32	-0.5
641	+		GFF7448	0.41	+0.4
716	+		GFF7448	0.46	+1.0
716	+		GFF7448	0.46	+0.8
723	+		GFF7448	0.47	+0.1
724	-		GFF7448	0.47	+0.4
785	+		GFF7448	0.51	+0.0
786	-		GFF7448	0.51	+0.1
970	+		GFF7448	0.64	+1.1
1,046	+		GFF7448	0.70	-0.6
1,046	+		GFF7448	0.70	+0.2
1,047	-		GFF7448	0.70	-0.3
1,047	-		GFF7448	0.70	-1.4
1,047	-		GFF7448	0.70	+0.1
1,047	-		GFF7448	0.70	+0.6
1,130	+		GFF7448	0.76	+0.1
1,130	+		GFF7448	0.76	-0.9
1,167	-		GFF7448	0.78	+1.2
1,224	-		GFF7448	0.82	-0.1
1,319	+		GFF7448	0.89	-0.6
1,319	+		GFF7448	0.89	-0.2
1,319	+		GFF7448	0.89	-0.3
1,319	+		GFF7448	0.89	-0.2
1,319	+		GFF7448	0.89	+1.3
1,319	+		GFF7448	0.89	+0.0
1,320	-		GFF7448	0.89	-0.3
1,320	-		GFF7448	0.89	-1.4
1,320	-		GFF7448	0.89	-1.1
1,320	-		GFF7448	0.89	-0.2
1,395	+				-0.2
1,395	+				-1.6
1,395	+				+0.5
1,396	-				-0.7