Strain Fitness in Variovorax sp. SCN45 around GFF7441

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
339	+		GFF7438	0.83	+0.6
339	+		GFF7438	0.83	+0.4
340	-		GFF7438	0.83	+1.1
855	+		GFF7440	0.19	+0.2
996	+		GFF7440	0.55	-0.0
996	+		GFF7440	0.55	-0.5
996	+		GFF7440	0.55	-0.2
997	-		GFF7440	0.55	+1.6
997	-		GFF7440	0.55	-0.2
1,093	-		GFF7440	0.79	+0.0
1,202	+				+0.3
1,410	+		GFF7441	0.20	-0.3
1,422	+		GFF7441	0.24	+0.8
1,635	-		GFF7441	0.83	+0.3
1,821	+				+1.1
1,935	+				-0.4
1,946	+				-2.4
1,967	+				-0.6
1,967	+				-0.8
1,967	+				-0.2
1,995	+				+0.6
1,996	-				-0.3
1,996	-				-0.3
1,999	+				-0.1
2,000	-				+0.3
2,198	+				-0.2
2,220	-				+1.6