Strain Fitness in Variovorax sp. SCN45 around GFF7437

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7436 and GFF7437 are separated by 27 nucleotides GFF7436 - Mobile element protein, at 186 to 1,736 GFF7436 GFF7437 - Mobile element protein, at 1,764 to 2,501 GFF7437 Position (kb) 1 2 3Strain fitness (log2 ratio) -2 -1 0 1 2at 0.867 kb on + strand, within GFF7436at 0.868 kb on - strand, within GFF7436at 0.891 kb on + strand, within GFF7436at 0.891 kb on + strand, within GFF7436at 0.891 kb on + strand, within GFF7436at 0.892 kb on - strand, within GFF7436at 0.892 kb on - strand, within GFF7436at 0.912 kb on + strand, within GFF7436at 0.912 kb on + strand, within GFF7436at 0.913 kb on - strand, within GFF7436at 0.913 kb on - strand, within GFF7436at 0.913 kb on - strand, within GFF7436at 1.215 kb on + strand, within GFF7436at 1.215 kb on + strand, within GFF7436at 1.216 kb on - strand, within GFF7436at 1.216 kb on - strand, within GFF7436at 1.216 kb on - strand, within GFF7436at 1.239 kb on + strand, within GFF7436at 1.239 kb on + strand, within GFF7436at 1.239 kb on + strand, within GFF7436at 1.240 kb on - strand, within GFF7436at 1.240 kb on - strand, within GFF7436at 1.240 kb on - strand, within GFF7436at 1.240 kb on - strand, within GFF7436at 1.240 kb on - strand, within GFF7436at 1.242 kb on + strand, within GFF7436at 1.242 kb on + strand, within GFF7436at 1.242 kb on + strand, within GFF7436at 1.242 kb on + strand, within GFF7436at 1.242 kb on + strand, within GFF7436at 1.242 kb on + strand, within GFF7436at 1.242 kb on + strand, within GFF7436at 1.243 kb on - strand, within GFF7436at 1.243 kb on - strand, within GFF7436at 1.243 kb on - strand, within GFF7436at 1.243 kb on - strand, within GFF7436at 1.243 kb on - strand, within GFF7436at 1.243 kb on - strand, within GFF7436at 1.243 kb on - strand, within GFF7436at 1.243 kb on - strand, within GFF7436at 1.243 kb on - strand, within GFF7436at 1.243 kb on - strand, within GFF7436at 1.243 kb on - strand, within GFF7436at 1.243 kb on - strand, within GFF7436at 1.249 kb on + strand, within GFF7436at 1.557 kb on + strand, within GFF7436at 1.557 kb on + strand, within GFF7436at 1.558 kb on - strand, within GFF7436at 1.617 kb on + strandat 1.725 kb on + strandat 1.725 kb on + strandat 1.725 kb on + strandat 1.728 kb on + strandat 1.728 kb on + strandat 1.728 kb on + strandat 1.729 kb on - strandat 1.729 kb on - strandat 1.729 kb on - strandat 1.729 kb on - strandat 1.729 kb on - strandat 1.729 kb on - strandat 1.729 kb on - strandat 1.729 kb on - strandat 1.729 kb on - strandat 1.778 kb on + strandat 1.778 kb on + strandat 1.778 kb on + strandat 1.778 kb on + strandat 1.778 kb on + strandat 1.778 kb on + strandat 1.778 kb on + strandat 1.778 kb on + strandat 1.778 kb on + strandat 1.778 kb on + strandat 1.779 kb on - strandat 1.779 kb on - strandat 1.779 kb on - strandat 1.779 kb on - strandat 1.779 kb on - strandat 1.779 kb on - strandat 1.779 kb on - strandat 1.779 kb on - strandat 1.779 kb on - strandat 1.894 kb on + strand, within GFF7437at 1.894 kb on + strand, within GFF7437at 1.894 kb on + strand, within GFF7437at 1.894 kb on + strand, within GFF7437at 1.894 kb on + strand, within GFF7437at 1.894 kb on + strand, within GFF7437at 1.895 kb on - strand, within GFF7437at 2.160 kb on + strand, within GFF7437at 2.161 kb on - strand, within GFF7437at 2.161 kb on - strand, within GFF7437at 2.161 kb on - strand, within GFF7437at 2.161 kb on - strand, within GFF7437at 2.191 kb on + strand, within GFF7437at 2.191 kb on + strand, within GFF7437at 2.191 kb on + strand, within GFF7437at 2.191 kb on + strand, within GFF7437at 2.192 kb on - strand, within GFF7437at 2.192 kb on - strand, within GFF7437at 2.192 kb on - strand, within GFF7437at 2.192 kb on - strand, within GFF7437at 2.192 kb on - strand, within GFF7437at 2.192 kb on - strand, within GFF7437at 2.391 kb on + strand, within GFF7437at 2.391 kb on + strand, within GFF7437at 2.391 kb on + strand, within GFF7437at 2.391 kb on + strand, within GFF7437at 2.391 kb on + strand, within GFF7437at 2.392 kb on - strand, within GFF7437at 2.392 kb on - strand, within GFF7437at 2.392 kb on - strand, within GFF7437at 2.392 kb on - strand, within GFF7437at 2.392 kb on - strand, within GFF7437at 2.392 kb on - strand, within GFF7437at 2.392 kb on - strand, within GFF7437at 2.392 kb on - strand, within GFF7437at 2.392 kb on - strand, within GFF7437at 2.473 kb on - strandat 2.544 kb on + strandat 2.544 kb on + strandat 2.544 kb on + strandat 2.544 kb on + strandat 2.544 kb on + strandat 2.544 kb on + strandat 2.545 kb on - strandat 2.545 kb on - strandat 2.564 kb on - strandat 2.564 kb on - strandat 2.594 kb on + strandat 2.595 kb on - strandat 2.595 kb on - strandat 2.595 kb on - strandat 2.677 kb on + strandat 2.678 kb on - strandat 2.678 kb on - strandat 2.678 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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867 + GFF7436 0.44 -0.8
868 - GFF7436 0.44 -1.1
891 + GFF7436 0.45 +0.6
891 + GFF7436 0.45 +1.2
891 + GFF7436 0.45 -1.3
892 - GFF7436 0.46 +0.8
892 - GFF7436 0.46 -0.5
912 + GFF7436 0.47 +0.8
912 + GFF7436 0.47 -1.0
913 - GFF7436 0.47 -0.3
913 - GFF7436 0.47 -0.3
913 - GFF7436 0.47 +0.3
1,215 + GFF7436 0.66 -0.7
1,215 + GFF7436 0.66 +0.0
1,216 - GFF7436 0.66 +0.5
1,216 - GFF7436 0.66 -0.6
1,216 - GFF7436 0.66 +0.4
1,239 + GFF7436 0.68 -0.3
1,239 + GFF7436 0.68 -0.2
1,239 + GFF7436 0.68 -0.2
1,240 - GFF7436 0.68 +0.3
1,240 - GFF7436 0.68 -0.5
1,240 - GFF7436 0.68 +0.7
1,240 - GFF7436 0.68 +1.7
1,240 - GFF7436 0.68 -0.7
1,242 + GFF7436 0.68 -0.5
1,242 + GFF7436 0.68 +0.0
1,242 + GFF7436 0.68 -0.7
1,242 + GFF7436 0.68 +0.2
1,242 + GFF7436 0.68 +0.4
1,242 + GFF7436 0.68 +0.6
1,242 + GFF7436 0.68 -0.1
1,243 - GFF7436 0.68 -0.4
1,243 - GFF7436 0.68 +0.0
1,243 - GFF7436 0.68 -0.6
1,243 - GFF7436 0.68 -2.4
1,243 - GFF7436 0.68 -0.0
1,243 - GFF7436 0.68 -0.8
1,243 - GFF7436 0.68 -1.2
1,243 - GFF7436 0.68 -0.4
1,243 - GFF7436 0.68 -0.0
1,243 - GFF7436 0.68 -0.5
1,243 - GFF7436 0.68 +0.7
1,243 - GFF7436 0.68 +0.2
1,249 + GFF7436 0.69 +0.6
1,557 + GFF7436 0.88 +0.7
1,557 + GFF7436 0.88 +1.7
1,558 - GFF7436 0.88 -0.8
1,617 + +0.2
1,725 + +0.2
1,725 + +1.2
1,725 + -0.3
1,728 + -0.9
1,728 + -1.8
1,728 + +0.8
1,729 - +1.6
1,729 - +0.0
1,729 - +0.0
1,729 - -0.8
1,729 - +0.7
1,729 - -0.5
1,729 - +0.5
1,729 - -0.5
1,729 - -0.2
1,778 + -2.0
1,778 + -0.2
1,778 + -0.4
1,778 + +0.6
1,778 + +0.1
1,778 + +0.9
1,778 + -1.3
1,778 + -0.5
1,778 + +0.5
1,778 + -0.6
1,779 - -0.4
1,779 - -0.5
1,779 - +0.0
1,779 - +0.3
1,779 - +0.8
1,779 - -0.5
1,779 - +0.3
1,779 - -0.8
1,779 - +2.1
1,894 + GFF7437 0.18 +1.5
1,894 + GFF7437 0.18 +0.3
1,894 + GFF7437 0.18 -0.1
1,894 + GFF7437 0.18 +0.7
1,894 + GFF7437 0.18 +0.1
1,894 + GFF7437 0.18 +0.3
1,895 - GFF7437 0.18 -0.7
2,160 + GFF7437 0.54 +0.7
2,161 - GFF7437 0.54 -0.7
2,161 - GFF7437 0.54 +0.0
2,161 - GFF7437 0.54 -1.2
2,161 - GFF7437 0.54 -0.5
2,191 + GFF7437 0.58 -1.7
2,191 + GFF7437 0.58 +0.1
2,191 + GFF7437 0.58 +0.0
2,191 + GFF7437 0.58 +1.7
2,192 - GFF7437 0.58 +1.6
2,192 - GFF7437 0.58 +0.1
2,192 - GFF7437 0.58 +0.5
2,192 - GFF7437 0.58 -0.7
2,192 - GFF7437 0.58 +0.2
2,192 - GFF7437 0.58 +0.7
2,391 + GFF7437 0.85 +0.4
2,391 + GFF7437 0.85 +1.2
2,391 + GFF7437 0.85 -0.6
2,391 + GFF7437 0.85 -1.3
2,391 + GFF7437 0.85 -0.3
2,392 - GFF7437 0.85 +0.7
2,392 - GFF7437 0.85 -1.3
2,392 - GFF7437 0.85 -1.8
2,392 - GFF7437 0.85 +1.7
2,392 - GFF7437 0.85 +1.0
2,392 - GFF7437 0.85 +0.2
2,392 - GFF7437 0.85 -1.7
2,392 - GFF7437 0.85 +0.6
2,392 - GFF7437 0.85 +2.0
2,473 - +0.4
2,544 + -0.2
2,544 + -0.4
2,544 + -0.5
2,544 + +0.8
2,544 + -0.7
2,544 + -0.3
2,545 - -0.1
2,545 - +0.9
2,564 - +0.3
2,564 - +0.3
2,594 + -0.0
2,595 - +0.3
2,595 - -0.6
2,595 - -0.9
2,677 + +0.6
2,678 - -0.1
2,678 - -0.7
2,678 - -0.1

Or see this region's nucleotide sequence