Strain Fitness in Variovorax sp. SCN45 around GFF7435

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
1,648	+		GFF7434	0.44	-1.3
1,648	+		GFF7434	0.44	-0.2
1,648	+		GFF7434	0.44	-1.1
1,648	+		GFF7434	0.44	+0.7
1,648	+		GFF7434	0.44	+0.2
1,648	+		GFF7434	0.44	+0.8
1,648	+		GFF7434	0.44	+0.3
1,648	+		GFF7434	0.44	-0.2
1,648	+		GFF7434	0.44	-1.0
1,648	+		GFF7434	0.44	+0.8
1,649	-		GFF7434	0.44	+0.2
1,649	-		GFF7434	0.44	-0.4
1,649	-		GFF7434	0.44	-0.7
1,649	-		GFF7434	0.44	+1.1
1,649	-		GFF7434	0.44	-0.2
1,649	-		GFF7434	0.44	-0.6
1,649	-		GFF7434	0.44	+0.1
1,649	-		GFF7434	0.44	+1.2
1,649	-		GFF7434	0.44	-0.6
1,649	-		GFF7434	0.44	+1.3
1,649	-		GFF7434	0.44	-0.3
1,649	-		GFF7434	0.44	-0.7
1,649	-		GFF7434	0.44	+0.2
1,649	-		GFF7434	0.44	+0.2
1,649	-		GFF7434	0.44	-2.0
1,649	-		GFF7434	0.44	+0.4
1,649	-		GFF7434	0.44	+0.5
1,649	-		GFF7434	0.44	-1.0
1,651	+		GFF7434	0.44	-0.8
1,651	+		GFF7434	0.44	+0.1
1,651	+		GFF7434	0.44	-0.2
1,651	+		GFF7434	0.44	+0.0
1,651	+		GFF7434	0.44	+1.3
1,652	-		GFF7434	0.44	-0.5
1,652	-		GFF7434	0.44	-0.2
1,852	+		GFF7434	0.56	+0.4
1,852	+		GFF7434	0.56	-1.0
1,852	+		GFF7434	0.56	+0.9
1,852	+		GFF7434	0.56	-1.6
1,852	+		GFF7434	0.56	-1.3
1,852	+		GFF7434	0.56	-0.0
1,852	+		GFF7434	0.56	+0.1
1,852	+		GFF7434	0.56	+0.3
1,852	+		GFF7434	0.56	-0.5
1,852	+		GFF7434	0.56	-0.5
1,852	+		GFF7434	0.56	+0.0
1,852	+		GFF7434	0.56	+0.4
1,852	+		GFF7434	0.56	-1.2
1,852	+		GFF7434	0.56	-0.8
1,852	+		GFF7434	0.56	-0.4
1,852	+		GFF7434	0.56	-0.1
1,852	+		GFF7434	0.56	-2.6
1,852	+		GFF7434	0.56	-0.4
1,852	+		GFF7434	0.56	+0.3
1,852	+		GFF7434	0.56	+0.2
1,852	+		GFF7434	0.56	-0.6
1,852	+		GFF7434	0.56	+0.7
1,852	+		GFF7434	0.56	-1.1
1,852	+		GFF7434	0.56	-0.4
1,852	+		GFF7434	0.56	-0.1
1,852	+		GFF7434	0.56	+0.9
1,852	+		GFF7434	0.56	-0.5
1,852	+		GFF7434	0.56	+1.6
1,852	+		GFF7434	0.56	-0.2
1,852	+		GFF7434	0.56	-0.2
1,852	+		GFF7434	0.56	-0.0
1,852	+		GFF7434	0.56	-0.4
1,852	+		GFF7434	0.56	-0.2
1,853	-		GFF7434	0.56	-0.1
1,853	-		GFF7434	0.56	-0.2
1,853	-		GFF7434	0.56	-0.0
1,853	-		GFF7434	0.56	-0.2
1,853	-		GFF7434	0.56	-0.8
1,853	-		GFF7434	0.56	-1.2
1,853	-		GFF7434	0.56	-0.4
1,853	-		GFF7434	0.56	-0.3
1,853	-		GFF7434	0.56	-0.0
1,853	-		GFF7434	0.56	+0.5
1,853	-		GFF7434	0.56	-1.6
1,853	-		GFF7434	0.56	-0.0
1,853	-		GFF7434	0.56	+0.0
1,853	-		GFF7434	0.56	+1.6
1,853	-		GFF7434	0.56	-0.1
1,853	-		GFF7434	0.56	+0.1
1,853	-		GFF7434	0.56	-0.0
1,853	-		GFF7434	0.56	-0.1
1,853	-		GFF7434	0.56	+0.2
1,853	-		GFF7434	0.56	+0.6
1,853	-		GFF7434	0.56	+0.6
1,853	-		GFF7434	0.56	+0.2
1,853	-		GFF7434	0.56	-0.0
1,853	-		GFF7434	0.56	+1.2
1,853	-		GFF7434	0.56	+1.4
1,853	-		GFF7434	0.56	+0.7
1,853	-		GFF7434	0.56	+0.0
1,853	-		GFF7434	0.56	+0.2
1,853	-		GFF7434	0.56	-0.4
1,853	-		GFF7434	0.56	+0.0
1,853	-		GFF7434	0.56	-0.1
1,853	-		GFF7434	0.56	-0.4
1,853	-		GFF7434	0.56	-0.7
1,864	+		GFF7434	0.57	-0.2
1,864	+		GFF7434	0.57	+0.5
1,864	+		GFF7434	0.57	+0.1
1,864	+		GFF7434	0.57	-0.1
1,864	+		GFF7434	0.57	-1.9
1,864	+		GFF7434	0.57	+0.2
1,864	+		GFF7434	0.57	-0.3
1,865	-		GFF7434	0.57	+0.4
1,865	-		GFF7434	0.57	+0.8
1,865	-		GFF7434	0.57	+2.0
1,865	-		GFF7434	0.57	+0.3
1,865	-		GFF7434	0.57	-0.2
1,865	-		GFF7434	0.57	-0.3
1,903	+		GFF7434	0.59	-1.3
1,903	+		GFF7434	0.59	+0.9
1,903	+		GFF7434	0.59	+1.6
1,903	+		GFF7434	0.59	-0.4
1,903	+		GFF7434	0.59	-0.1
1,903	+		GFF7434	0.59	+1.5
1,903	+		GFF7434	0.59	-0.9
1,903	+		GFF7434	0.59	+0.2
1,903	+		GFF7434	0.59	-0.2
1,903	+		GFF7434	0.59	+1.3
1,903	+		GFF7434	0.59	-0.8
1,903	+		GFF7434	0.59	-0.5
1,903	+		GFF7434	0.59	+1.3
1,903	+		GFF7434	0.59	+0.5
1,903	+		GFF7434	0.59	-0.6
1,903	+		GFF7434	0.59	+1.6
1,903	+		GFF7434	0.59	+0.0
1,903	+		GFF7434	0.59	-0.3
1,903	+		GFF7434	0.59	-1.9
1,903	+		GFF7434	0.59	-0.1
1,904	-		GFF7434	0.59	+0.7
1,904	-		GFF7434	0.59	-0.2
1,904	-		GFF7434	0.59	-0.8
1,904	-		GFF7434	0.59	+0.9
1,904	-		GFF7434	0.59	-0.4
1,904	-		GFF7434	0.59	+0.7
1,904	-		GFF7434	0.59	-0.3
1,904	-		GFF7434	0.59	-0.3
1,904	-		GFF7434	0.59	-1.3
1,904	-		GFF7434	0.59	-0.2
1,904	-		GFF7434	0.59	+0.8
1,904	-		GFF7434	0.59	+1.4
1,904	-		GFF7434	0.59	+1.7
1,904	-		GFF7434	0.59	+1.0
1,904	-		GFF7434	0.59	+0.2
1,904	-		GFF7434	0.59	+0.0
1,904	-		GFF7434	0.59	+1.2
1,904	-		GFF7434	0.59	+0.4
1,904	-		GFF7434	0.59	-0.8
1,904	-		GFF7434	0.59	-0.1
1,904	-		GFF7434	0.59	-0.1
1,904	-		GFF7434	0.59	-1.5
1,904	-		GFF7434	0.59	+0.7
1,904	-		GFF7434	0.59	-0.2
1,933	+		GFF7434	0.60	+1.0
1,934	-		GFF7434	0.61	+1.1
2,005	+		GFF7434	0.65	-0.1
2,006	-		GFF7434	0.65	-0.3
2,006	-		GFF7434	0.65	-0.4
2,006	-		GFF7434	0.65	-1.6
2,006	-		GFF7434	0.65	+0.8
2,006	-		GFF7434	0.65	+0.2
2,014	+		GFF7434	0.65	-0.3
2,014	+		GFF7434	0.65	-0.8
2,015	-		GFF7434	0.65	+0.7
2,015	-		GFF7434	0.65	-0.2
2,041	+		GFF7434	0.67	-0.0
2,042	-		GFF7434	0.67	-0.8
2,042	-		GFF7434	0.67	-0.2
2,091	-		GFF7434	0.69	-0.4
2,158	+		GFF7434	0.73	+0.9
2,158	+		GFF7434	0.73	+0.0
2,158	+		GFF7434	0.73	-0.5
2,158	+		GFF7434	0.73	-0.5
2,158	+		GFF7434	0.73	-0.6
2,158	+		GFF7434	0.73	-1.9
2,158	+		GFF7434	0.73	-0.4
2,158	+		GFF7434	0.73	+0.4
2,158	+		GFF7434	0.73	-0.0
2,158	+		GFF7434	0.73	+1.8
2,158	+		GFF7434	0.73	-1.3
2,158	+		GFF7434	0.73	+0.1
2,158	+		GFF7434	0.73	-0.5
2,158	+		GFF7434	0.73	-0.5
2,158	+		GFF7434	0.73	-0.4
2,158	+		GFF7434	0.73	+0.1
2,158	+		GFF7434	0.73	+0.2
2,158	+		GFF7434	0.73	+0.2
2,158	+		GFF7434	0.73	+0.2
2,158	+		GFF7434	0.73	+0.1
2,158	+		GFF7434	0.73	-0.2
2,158	+		GFF7434	0.73	+0.4
2,158	+		GFF7434	0.73	-0.3
2,158	+		GFF7434	0.73	+0.0
2,158	+		GFF7434	0.73	-0.3
2,158	+		GFF7434	0.73	-0.2
2,158	+		GFF7434	0.73	+1.0
2,158	+		GFF7434	0.73	-1.3
2,158	+		GFF7434	0.73	+0.1
2,158	+		GFF7434	0.73	+0.9
2,158	+		GFF7434	0.73	+0.6
2,158	+		GFF7434	0.73	-1.3
2,158	+		GFF7434	0.73	-0.8
2,158	+		GFF7434	0.73	-0.6
2,158	+		GFF7434	0.73	+1.4
2,158	+		GFF7434	0.73	+1.8
2,158	+		GFF7434	0.73	-0.1
2,158	+		GFF7434	0.73	-2.1
2,158	+		GFF7434	0.73	+0.5
2,158	+		GFF7434	0.73	+0.6
2,158	+		GFF7434	0.73	+0.2
2,158	+		GFF7434	0.73	-0.1
2,158	+		GFF7434	0.73	+1.2
2,158	+		GFF7434	0.73	-0.9
2,158	+		GFF7434	0.73	-0.5
2,158	+		GFF7434	0.73	+0.6
2,159	-		GFF7434	0.73	-1.0
2,159	-		GFF7434	0.73	-0.8
2,159	-		GFF7434	0.73	+0.6
2,159	-		GFF7434	0.73	+1.2
2,159	-		GFF7434	0.73	+0.8
2,159	-		GFF7434	0.73	+0.1
2,159	-		GFF7434	0.73	+0.7
2,159	-		GFF7434	0.73	+1.3
2,159	-		GFF7434	0.73	+0.8
2,159	-		GFF7434	0.73	-0.4
2,159	-		GFF7434	0.73	+0.5
2,159	-		GFF7434	0.73	-0.4
2,159	-		GFF7434	0.73	+1.0
2,159	-		GFF7434	0.73	-1.8
2,159	-		GFF7434	0.73	+0.3
2,159	-		GFF7434	0.73	+0.0
2,159	-		GFF7434	0.73	-2.2
2,159	-		GFF7434	0.73	-0.5
2,159	-		GFF7434	0.73	-0.5
2,159	-		GFF7434	0.73	-1.2
2,159	-		GFF7434	0.73	-0.7
2,159	-		GFF7434	0.73	-0.6
2,159	-		GFF7434	0.73	-0.6
2,159	-		GFF7434	0.73	+1.1
2,159	-		GFF7434	0.73	+0.0
2,159	-		GFF7434	0.73	-0.1
2,159	-		GFF7434	0.73	-1.3
2,159	-		GFF7434	0.73	+1.1
2,159	-		GFF7434	0.73	-1.3
2,159	-		GFF7434	0.73	+0.2
2,159	-		GFF7434	0.73	+0.4
2,159	-		GFF7434	0.73	-0.9
2,159	-		GFF7434	0.73	+0.3
2,159	-		GFF7434	0.73	+1.2
2,159	-		GFF7434	0.73	-0.4
2,160	-		GFF7434	0.73	-0.2
2,314	+		GFF7434	0.82	+0.4
2,314	+		GFF7434	0.82	+1.0
2,314	+		GFF7434	0.82	-0.2
2,314	+		GFF7434	0.82	-0.9
2,314	+		GFF7434	0.82	+0.7
2,314	+		GFF7434	0.82	+1.1
2,314	+		GFF7434	0.82	+0.6
2,314	+		GFF7434	0.82	+1.0
2,314	+		GFF7434	0.82	+2.0
2,314	+		GFF7434	0.82	-0.3
2,314	+		GFF7434	0.82	+0.3
2,314	+		GFF7434	0.82	-0.7
2,314	+		GFF7434	0.82	+0.8
2,315	-		GFF7434	0.82	-0.0
2,315	-		GFF7434	0.82	+0.5
2,315	-		GFF7434	0.82	+0.5
2,315	-		GFF7434	0.82	-1.0
2,315	-		GFF7434	0.82	-0.1
2,315	-		GFF7434	0.82	-1.0
2,315	-		GFF7434	0.82	-0.1
2,315	-		GFF7434	0.82	-0.4
2,315	-		GFF7434	0.82	-0.0
2,315	-		GFF7434	0.82	-0.1
2,524	+				-0.5
2,524	+				-0.2
2,524	+				+0.4
2,524	+				+0.5
2,524	+				+2.4
2,524	+				-1.0
2,524	+				+0.3
2,524	+				-0.6
2,524	+				+1.7
2,524	+				+0.8
2,525	-				-0.3
2,525	-				+0.8
2,525	-				-0.6
2,525	-				-0.4
2,525	-				+0.6
2,525	-				+0.5
2,525	-				-0.2
2,525	-				-0.5
2,525	-				+0.8
2,764	-		GFF7435	0.28	-0.8
2,982	+		GFF7435	0.71	-0.1
2,982	+		GFF7435	0.71	+0.1
2,982	+		GFF7435	0.71	+1.4
2,982	+		GFF7435	0.71	-0.3
2,982	+		GFF7435	0.71	+0.2
2,982	+		GFF7435	0.71	+0.2
2,982	+		GFF7435	0.71	-0.2
2,982	+		GFF7435	0.71	+0.8
2,983	-		GFF7435	0.72	-0.2
2,983	-		GFF7435	0.72	+0.5
2,983	-		GFF7435	0.72	+0.7
2,983	-		GFF7435	0.72	-0.6
2,983	-		GFF7435	0.72	+0.7
2,983	-		GFF7435	0.72	-0.5
2,983	-		GFF7435	0.72	-0.1
2,983	-		GFF7435	0.72	-2.0
3,000	+		GFF7435	0.75	-0.1
3,000	+		GFF7435	0.75	+0.2
3,000	+		GFF7435	0.75	+0.2
3,000	+		GFF7435	0.75	+0.6
3,000	+		GFF7435	0.75	-0.5
3,000	+		GFF7435	0.75	+0.9
3,000	+		GFF7435	0.75	-0.8
3,000	+		GFF7435	0.75	+0.1
3,000	+		GFF7435	0.75	+0.5
3,000	+		GFF7435	0.75	-1.3
3,000	+		GFF7435	0.75	+0.6
3,000	+		GFF7435	0.75	+1.4
3,000	+		GFF7435	0.75	+0.4
3,001	-		GFF7435	0.75	-0.4
3,001	-		GFF7435	0.75	+0.5
3,001	-		GFF7435	0.75	-0.3
3,001	-		GFF7435	0.75	+0.2
3,001	-		GFF7435	0.75	-0.1
3,001	-		GFF7435	0.75	-0.2
3,001	-		GFF7435	0.75	-0.8
3,001	-		GFF7435	0.75	+0.1
3,001	-		GFF7435	0.75	+1.1
3,001	-		GFF7435	0.75	+3.4
3,001	-		GFF7435	0.75	+0.8
3,001	-		GFF7435	0.75	-0.4
3,001	-		GFF7435	0.75	-1.0
3,006	+		GFF7435	0.76	-0.8
3,006	+		GFF7435	0.76	-1.2
3,006	+		GFF7435	0.76	-0.3
3,006	+		GFF7435	0.76	+0.4
3,006	+		GFF7435	0.76	+0.1
3,006	+		GFF7435	0.76	-2.8
3,006	+		GFF7435	0.76	+0.1
3,006	+		GFF7435	0.76	+0.4
3,006	+		GFF7435	0.76	-0.2
3,007	-		GFF7435	0.76	-0.0
3,007	-		GFF7435	0.76	+0.9
3,007	-		GFF7435	0.76	-0.2
3,007	-		GFF7435	0.76	+0.3
3,007	-		GFF7435	0.76	-0.3
3,007	-		GFF7435	0.76	+1.0
3,007	-		GFF7435	0.76	-0.1
3,007	-		GFF7435	0.76	+0.2
3,007	-		GFF7435	0.76	+1.0
3,007	-		GFF7435	0.76	-0.4
3,097	-				+0.0
3,097	-				+0.2
3,097	-				+0.9
3,097	-				+0.6
3,097	-				-0.0
3,097	-				-0.2
3,097	-				-0.9
3,097	-				+0.4
3,097	-				+1.3
3,097	-				-0.3
3,097	-				-1.3
3,097	-				-1.4
3,097	-				+0.0
3,097	-				+0.9