Strain Fitness in Variovorax sp. SCN45 around GFF7433

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7432 and GFF7433 overlap by 4 nucleotidesGFF7433 and GFF7434 are separated by 56 nucleotides GFF7432 - hypothetical protein, at 171 to 482 GFF7432 GFF7433 - Mobile element protein, at 479 to 817 GFF7433 GFF7434 - Mobile element protein, at 874 to 2,625 GFF7434 Position (kb) 0 1Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 0.043 kb on + strandat 0.043 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.089 kb on + strandat 0.089 kb on + strandat 0.089 kb on + strandat 0.089 kb on + strandat 0.089 kb on + strandat 0.089 kb on + strandat 0.089 kb on + strandat 0.090 kb on - strandat 0.090 kb on - strandat 0.090 kb on - strandat 0.090 kb on - strandat 0.371 kb on + strand, within GFF7432at 0.371 kb on + strand, within GFF7432at 0.371 kb on + strand, within GFF7432at 0.371 kb on + strand, within GFF7432at 0.371 kb on + strand, within GFF7432at 0.371 kb on + strand, within GFF7432at 0.371 kb on + strand, within GFF7432at 0.371 kb on + strand, within GFF7432at 0.371 kb on + strand, within GFF7432at 0.372 kb on - strand, within GFF7432at 0.372 kb on - strand, within GFF7432at 0.372 kb on - strand, within GFF7432at 0.372 kb on - strand, within GFF7432at 0.372 kb on - strand, within GFF7432at 0.372 kb on - strand, within GFF7432at 0.372 kb on - strand, within GFF7432at 0.372 kb on - strand, within GFF7432at 0.517 kb on + strand, within GFF7433at 0.517 kb on + strand, within GFF7433at 0.596 kb on + strand, within GFF7433at 0.596 kb on + strand, within GFF7433at 0.596 kb on + strand, within GFF7433at 0.596 kb on + strand, within GFF7433at 0.596 kb on + strand, within GFF7433at 0.596 kb on + strand, within GFF7433at 0.596 kb on + strand, within GFF7433at 0.596 kb on + strand, within GFF7433at 0.596 kb on + strand, within GFF7433at 0.596 kb on + strand, within GFF7433at 0.596 kb on + strand, within GFF7433at 0.596 kb on + strand, within GFF7433at 0.596 kb on + strand, within GFF7433at 0.596 kb on + strand, within GFF7433at 0.596 kb on + strand, within GFF7433at 0.596 kb on + strand, within GFF7433at 0.596 kb on + strand, within GFF7433at 0.596 kb on + strand, within GFF7433at 0.596 kb on + strand, within GFF7433at 0.596 kb on + strand, within GFF7433at 0.597 kb on - strand, within GFF7433at 0.597 kb on - strand, within GFF7433at 0.597 kb on - strand, within GFF7433at 0.597 kb on - strand, within GFF7433at 0.597 kb on - strand, within GFF7433at 0.597 kb on - strand, within GFF7433at 0.597 kb on - strand, within GFF7433at 0.597 kb on - strand, within GFF7433at 0.597 kb on - strand, within GFF7433at 0.597 kb on - strand, within GFF7433at 0.597 kb on - strand, within GFF7433at 0.597 kb on - strand, within GFF7433at 0.597 kb on - strand, within GFF7433at 0.597 kb on - strand, within GFF7433at 0.597 kb on - strand, within GFF7433at 0.935 kb on + strandat 0.935 kb on + strandat 0.935 kb on + strandat 0.935 kb on + strandat 0.935 kb on + strandat 0.935 kb on + strandat 0.935 kb on + strandat 0.935 kb on + strandat 0.935 kb on + strandat 0.936 kb on - strandat 0.936 kb on - strandat 0.936 kb on - strandat 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.513 kb on + strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.514 kb on - strand, within GFF7434at 1.648 kb on + strand, within GFF7434at 1.648 kb on + strand, within GFF7434at 1.648 kb on + strand, within GFF7434at 1.648 kb on + strand, within GFF7434at 1.648 kb on + strand, within GFF7434at 1.648 kb on + strand, within GFF7434at 1.648 kb on + strand, within GFF7434at 1.648 kb on + strand, within GFF7434at 1.648 kb on + strand, within GFF7434at 1.648 kb on + strand, within GFF7434at 1.649 kb on - strand, within GFF7434at 1.649 kb on - strand, within GFF7434at 1.649 kb on - strand, within GFF7434at 1.649 kb on - strand, within GFF7434at 1.649 kb on - strand, within GFF7434at 1.649 kb on - strand, within GFF7434at 1.649 kb on - strand, within GFF7434at 1.649 kb on - strand, within GFF7434at 1.649 kb on - strand, within GFF7434at 1.649 kb on - strand, within GFF7434at 1.649 kb on - strand, within GFF7434at 1.649 kb on - strand, within GFF7434at 1.649 kb on - strand, within GFF7434at 1.649 kb on - strand, within GFF7434at 1.649 kb on - strand, within GFF7434at 1.649 kb on - strand, within GFF7434at 1.649 kb on - strand, within GFF7434at 1.649 kb on - strand, within GFF7434at 1.651 kb on + strand, within GFF7434at 1.651 kb on + strand, within GFF7434at 1.651 kb on + strand, within GFF7434at 1.651 kb on + strand, within GFF7434at 1.651 kb on + strand, within GFF7434at 1.652 kb on - strand, within GFF7434at 1.652 kb on - strand, within GFF7434

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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43 + -0.7
43 + -0.2
51 + -0.9
51 + +0.5
51 + +0.8
51 + +0.3
51 + -0.3
51 + +0.3
51 + -1.9
51 + -0.0
51 + -0.2
51 + -1.2
51 + +1.6
51 + -0.2
51 + +0.2
51 + +1.6
51 + +0.2
51 + +0.1
51 + -0.5
51 + -0.3
51 + +0.5
51 + +0.4
51 + +0.2
51 + +0.0
51 + +0.7
51 + -1.6
51 + +0.2
51 + -0.6
89 + +0.0
89 + -0.4
89 + +1.1
89 + +1.2
89 + -1.2
89 + -0.1
89 + -0.0
90 - -0.2
90 - +0.1
90 - +0.8
90 - -2.1
371 + GFF7432 0.64 -0.4
371 + GFF7432 0.64 -0.6
371 + GFF7432 0.64 -0.3
371 + GFF7432 0.64 +0.6
371 + GFF7432 0.64 -0.2
371 + GFF7432 0.64 -0.0
371 + GFF7432 0.64 -0.1
371 + GFF7432 0.64 -2.4
371 + GFF7432 0.64 +0.1
372 - GFF7432 0.64 -0.8
372 - GFF7432 0.64 +0.2
372 - GFF7432 0.64 +1.3
372 - GFF7432 0.64 -0.0
372 - GFF7432 0.64 +0.4
372 - GFF7432 0.64 -0.3
372 - GFF7432 0.64 +1.1
372 - GFF7432 0.64 +0.7
517 + GFF7433 0.11 +0.1
517 + GFF7433 0.11 -0.2
596 + GFF7433 0.35 +0.5
596 + GFF7433 0.35 -1.3
596 + GFF7433 0.35 -0.0
596 + GFF7433 0.35 +1.1
596 + GFF7433 0.35 +0.6
596 + GFF7433 0.35 -1.3
596 + GFF7433 0.35 -0.1
596 + GFF7433 0.35 +0.3
596 + GFF7433 0.35 +0.8
596 + GFF7433 0.35 -0.5
596 + GFF7433 0.35 +0.2
596 + GFF7433 0.35 -0.5
596 + GFF7433 0.35 +1.2
596 + GFF7433 0.35 +0.2
596 + GFF7433 0.35 +0.4
596 + GFF7433 0.35 -0.3
596 + GFF7433 0.35 -0.0
596 + GFF7433 0.35 +1.8
596 + GFF7433 0.35 +0.1
596 + GFF7433 0.35 +1.4
597 - GFF7433 0.35 +0.1
597 - GFF7433 0.35 +0.4
597 - GFF7433 0.35 -0.2
597 - GFF7433 0.35 -0.1
597 - GFF7433 0.35 +0.8
597 - GFF7433 0.35 -0.8
597 - GFF7433 0.35 -0.7
597 - GFF7433 0.35 +0.2
597 - GFF7433 0.35 +0.2
597 - GFF7433 0.35 -0.8
597 - GFF7433 0.35 -1.9
597 - GFF7433 0.35 -0.8
597 - GFF7433 0.35 -0.5
597 - GFF7433 0.35 +0.2
597 - GFF7433 0.35 -0.5
935 + +0.1
935 + +0.5
935 + -0.1
935 + -0.4
935 + -1.9
935 + +1.0
935 + -1.0
935 + +0.5
935 + +1.0
936 - -0.2
936 - +0.4
936 - +0.0
1,513 + GFF7434 0.36 +0.5
1,513 + GFF7434 0.36 +0.9
1,513 + GFF7434 0.36 +0.6
1,513 + GFF7434 0.36 +0.4
1,513 + GFF7434 0.36 +0.1
1,513 + GFF7434 0.36 +0.5
1,513 + GFF7434 0.36 -0.2
1,513 + GFF7434 0.36 -0.6
1,513 + GFF7434 0.36 +0.0
1,513 + GFF7434 0.36 -0.1
1,513 + GFF7434 0.36 +0.6
1,513 + GFF7434 0.36 -0.4
1,513 + GFF7434 0.36 -0.3
1,513 + GFF7434 0.36 +1.4
1,513 + GFF7434 0.36 +1.3
1,513 + GFF7434 0.36 +0.4
1,513 + GFF7434 0.36 -0.0
1,513 + GFF7434 0.36 +0.3
1,513 + GFF7434 0.36 +0.0
1,513 + GFF7434 0.36 -0.4
1,513 + GFF7434 0.36 +0.5
1,513 + GFF7434 0.36 -0.6
1,513 + GFF7434 0.36 -0.6
1,513 + GFF7434 0.36 -0.2
1,513 + GFF7434 0.36 -0.6
1,513 + GFF7434 0.36 -0.2
1,513 + GFF7434 0.36 +0.4
1,513 + GFF7434 0.36 +0.7
1,513 + GFF7434 0.36 -0.9
1,513 + GFF7434 0.36 +0.9
1,513 + GFF7434 0.36 -0.2
1,513 + GFF7434 0.36 +0.3
1,513 + GFF7434 0.36 -0.5
1,513 + GFF7434 0.36 -0.5
1,513 + GFF7434 0.36 +1.3
1,513 + GFF7434 0.36 +0.6
1,513 + GFF7434 0.36 -0.5
1,513 + GFF7434 0.36 +1.0
1,513 + GFF7434 0.36 -0.5
1,514 - GFF7434 0.37 -0.5
1,514 - GFF7434 0.37 -0.9
1,514 - GFF7434 0.37 -0.5
1,514 - GFF7434 0.37 +0.5
1,514 - GFF7434 0.37 -1.3
1,514 - GFF7434 0.37 +0.8
1,514 - GFF7434 0.37 -0.2
1,514 - GFF7434 0.37 +0.4
1,514 - GFF7434 0.37 +0.4
1,514 - GFF7434 0.37 -3.0
1,514 - GFF7434 0.37 +0.3
1,514 - GFF7434 0.37 +0.2
1,514 - GFF7434 0.37 -0.5
1,514 - GFF7434 0.37 +0.1
1,514 - GFF7434 0.37 -0.3
1,514 - GFF7434 0.37 +0.6
1,514 - GFF7434 0.37 +0.3
1,514 - GFF7434 0.37 -1.3
1,514 - GFF7434 0.37 +0.0
1,514 - GFF7434 0.37 -0.4
1,514 - GFF7434 0.37 +0.7
1,514 - GFF7434 0.37 +0.2
1,514 - GFF7434 0.37 -0.3
1,514 - GFF7434 0.37 +0.2
1,514 - GFF7434 0.37 -0.4
1,648 + GFF7434 0.44 -1.3
1,648 + GFF7434 0.44 -0.2
1,648 + GFF7434 0.44 -1.1
1,648 + GFF7434 0.44 +0.7
1,648 + GFF7434 0.44 +0.2
1,648 + GFF7434 0.44 +0.8
1,648 + GFF7434 0.44 +0.3
1,648 + GFF7434 0.44 -0.2
1,648 + GFF7434 0.44 -1.0
1,648 + GFF7434 0.44 +0.8
1,649 - GFF7434 0.44 +0.2
1,649 - GFF7434 0.44 -0.4
1,649 - GFF7434 0.44 -0.7
1,649 - GFF7434 0.44 +1.1
1,649 - GFF7434 0.44 -0.2
1,649 - GFF7434 0.44 -0.6
1,649 - GFF7434 0.44 +0.1
1,649 - GFF7434 0.44 +1.2
1,649 - GFF7434 0.44 -0.6
1,649 - GFF7434 0.44 +1.3
1,649 - GFF7434 0.44 -0.3
1,649 - GFF7434 0.44 -0.7
1,649 - GFF7434 0.44 +0.2
1,649 - GFF7434 0.44 +0.2
1,649 - GFF7434 0.44 -2.0
1,649 - GFF7434 0.44 +0.4
1,649 - GFF7434 0.44 +0.5
1,649 - GFF7434 0.44 -1.0
1,651 + GFF7434 0.44 -0.8
1,651 + GFF7434 0.44 +0.1
1,651 + GFF7434 0.44 -0.2
1,651 + GFF7434 0.44 +0.0
1,651 + GFF7434 0.44 +1.3
1,652 - GFF7434 0.44 -0.5
1,652 - GFF7434 0.44 -0.2

Or see this region's nucleotide sequence