Strain Fitness in Variovorax sp. SCN45 around GFF7428

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
357	+		GFF7428	0.77	+0.3
358	-		GFF7428	0.77	-0.7
365	+		GFF7428	0.79	+0.0
378	+		GFF7428	0.82	-1.0
532	+				-0.5
532	+				+0.5
532	+				-2.1
533	-				-0.2
538	+				+0.5
538	+				-0.5
538	+				-0.1
538	+				+0.0
568	+		GFF7429	0.12	+0.9
568	+		GFF7429	0.12	+0.5
569	-		GFF7429	0.12	-0.9
569	-		GFF7429	0.12	-0.7
569	-		GFF7429	0.12	-0.1
569	-		GFF7429	0.12	+0.4
801	+		GFF7429	0.37	-0.0
802	-		GFF7429	0.37	-0.1
1,001	-		GFF7429	0.58	-0.1
1,077	-		GFF7429	0.67	-2.0
1,079	-		GFF7429	0.67	+0.0
1,079	-		GFF7429	0.67	-1.7
1,157	+		GFF7429	0.75	-0.2
1,158	-		GFF7429	0.75	-0.1
1,158	-		GFF7429	0.75	+0.7
1,222	-		GFF7429	0.82	-1.5
1,322	-				+0.2
1,375	-				-0.1