Strain Fitness in Variovorax sp. SCN45 around GFF7414

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
1,671	+		GFF7412	0.44	-0.2
1,671	+		GFF7412	0.44	-0.4
1,671	+		GFF7412	0.44	-0.0
1,671	+		GFF7412	0.44	+0.1
1,672	-		GFF7412	0.44	-0.4
1,672	-		GFF7412	0.44	-0.3
1,672	-		GFF7412	0.44	+0.2
1,672	-		GFF7412	0.44	-0.7
1,672	-		GFF7412	0.44	+0.2
1,672	-		GFF7412	0.44	-0.8
1,672	-		GFF7412	0.44	-0.7
1,672	-		GFF7412	0.44	-1.0
1,672	-		GFF7412	0.44	+0.0
1,672	-		GFF7412	0.44	-0.3
1,707	+		GFF7412	0.50	-0.5
1,707	+		GFF7412	0.50	-1.2
1,707	+		GFF7412	0.50	-0.0
1,707	+		GFF7412	0.50	-0.7
1,707	+		GFF7412	0.50	-0.4
1,708	-		GFF7412	0.50	+0.6
1,758	+		GFF7412	0.59	-0.4
1,758	+		GFF7412	0.59	-0.4
1,758	+		GFF7412	0.59	+0.2
1,758	+		GFF7412	0.59	+0.4
1,758	+		GFF7412	0.59	-0.3
1,758	+		GFF7412	0.59	+1.3
1,758	+		GFF7412	0.59	+0.0
1,758	+		GFF7412	0.59	-1.2
1,759	-		GFF7412	0.59	-0.2
1,759	-		GFF7412	0.59	+0.0
1,759	-		GFF7412	0.59	-0.6
1,759	-		GFF7412	0.59	-1.4
1,759	-		GFF7412	0.59	-0.0
1,759	-		GFF7412	0.59	-0.5
1,863	+		GFF7412	0.77	+0.2
1,863	+		GFF7412	0.77	-0.4
1,864	-		GFF7412	0.77	+0.0
1,864	-		GFF7412	0.77	+0.6
1,864	-		GFF7412	0.77	+0.0
1,864	-		GFF7412	0.77	-0.2
1,864	-		GFF7412	0.77	+0.4
1,864	-		GFF7412	0.77	+0.2
1,864	-		GFF7412	0.77	+0.1
1,902	+		GFF7412	0.84	+0.1
1,902	+		GFF7412	0.84	-0.3
1,903	-		GFF7412	0.84	-0.5
1,965	-				-1.0
1,965	-				+0.5
2,127	+		GFF7413	0.24	-0.7
2,128	-		GFF7413	0.24	+0.8
2,128	-		GFF7413	0.24	+1.3
2,128	-		GFF7413	0.24	+0.1
2,255	+		GFF7413	0.48	+0.8
2,255	+		GFF7413	0.48	-2.2
2,256	-		GFF7413	0.48	+0.0
2,256	-		GFF7413	0.48	+1.0
2,256	-		GFF7413	0.48	-0.8
2,256	-		GFF7413	0.48	+0.1
2,256	-		GFF7413	0.48	+1.0
2,330	+		GFF7413	0.61	-1.4
2,330	+		GFF7413	0.61	-0.2
2,331	-		GFF7413	0.61	-0.1
2,331	-		GFF7413	0.61	+0.1
2,331	-		GFF7413	0.61	-0.1
2,331	-		GFF7413	0.61	+1.9
2,331	-		GFF7413	0.61	+0.8
2,331	-		GFF7413	0.61	-0.4
2,331	-		GFF7413	0.61	+0.1
2,331	-		GFF7413	0.61	-0.3
2,331	-		GFF7413	0.61	+0.4
2,445	+		GFF7413	0.82	-1.8
2,445	+		GFF7413	0.82	+0.1
2,445	+		GFF7413	0.82	-1.5
2,445	+		GFF7413	0.82	-2.0
2,445	+		GFF7413	0.82	+0.7
2,445	+		GFF7413	0.82	+0.0
2,445	+		GFF7413	0.82	-0.1
2,445	+		GFF7413	0.82	+0.9
2,445	+		GFF7413	0.82	+1.8
2,445	+		GFF7413	0.82	-0.3
2,446	-		GFF7413	0.82	+0.3
2,446	-		GFF7413	0.82	-0.7
2,446	-		GFF7413	0.82	-0.5
2,446	-		GFF7413	0.82	+2.1
2,446	-		GFF7413	0.82	-1.7
2,446	-		GFF7413	0.82	-2.4
2,446	-		GFF7413	0.82	-0.1
2,446	-		GFF7413	0.82	-1.5
2,446	-		GFF7413	0.82	-0.8
2,446	-		GFF7413	0.82	+0.0
2,446	-		GFF7413	0.82	-0.5
2,559	+				-0.4
2,559	+				+0.6
2,559	+				-0.8
2,560	-				-0.5
2,560	-				+0.1
2,560	-				-1.7
2,560	-				-0.1
2,560	-				-0.1
2,560	-				+0.3
2,560	-				+0.2
2,596	+				+1.7
2,596	+				-0.3
2,597	-				-0.7
2,652	+				-0.4
2,653	-				-0.1
2,653	-				-1.1
2,664	+		GFF7414	0.10	+0.5
2,664	+		GFF7414	0.10	-0.5
2,664	+		GFF7414	0.10	-0.0
2,664	+		GFF7414	0.10	+0.3
2,664	+		GFF7414	0.10	+0.0
2,664	+		GFF7414	0.10	-0.1
2,664	+		GFF7414	0.10	-0.6
2,664	+		GFF7414	0.10	-1.0
2,664	+		GFF7414	0.10	-0.2
2,664	+		GFF7414	0.10	-0.3
2,664	+		GFF7414	0.10	-1.2
2,664	+		GFF7414	0.10	-1.8
2,665	-		GFF7414	0.10	-1.7
2,665	-		GFF7414	0.10	+0.2
2,665	-		GFF7414	0.10	-1.0
2,665	-		GFF7414	0.10	-1.2
2,665	-		GFF7414	0.10	+0.3
2,665	-		GFF7414	0.10	-0.2
2,665	-		GFF7414	0.10	-0.8
2,665	-		GFF7414	0.10	-0.5
2,665	-		GFF7414	0.10	+0.7
2,665	-		GFF7414	0.10	+0.6
2,665	-		GFF7414	0.10	+0.1
2,685	-		GFF7414	0.14	-0.6
2,685	-		GFF7414	0.14	+0.3
2,694	+		GFF7414	0.16	-0.5
2,695	-		GFF7414	0.16	-0.3
2,695	-		GFF7414	0.16	-0.2
2,695	-		GFF7414	0.16	+2.1
2,695	-		GFF7414	0.16	-0.7
2,718	+		GFF7414	0.21	+1.9
2,755	+		GFF7414	0.29	-0.4
2,755	+		GFF7414	0.29	+0.6
2,756	-		GFF7414	0.29	-0.5
2,790	+		GFF7414	0.36	+0.2
2,790	+		GFF7414	0.36	+0.3
2,790	+		GFF7414	0.36	-1.4
2,790	+		GFF7414	0.36	-0.7
2,790	+		GFF7414	0.36	-0.5
2,790	+		GFF7414	0.36	-0.0
2,790	+		GFF7414	0.36	+0.0
2,791	-		GFF7414	0.36	-0.6
2,791	-		GFF7414	0.36	+0.1
2,791	-		GFF7414	0.36	-0.7
2,791	-		GFF7414	0.36	+0.2
2,791	-		GFF7414	0.36	-0.2
2,791	-		GFF7414	0.36	-0.5
2,791	-		GFF7414	0.36	-0.2
2,791	-		GFF7414	0.36	-0.7
2,862	+		GFF7414	0.51	+0.4
2,862	+		GFF7414	0.51	-0.2
2,863	-		GFF7414	0.51	+0.8
2,892	+		GFF7414	0.57	+0.1
2,892	+		GFF7414	0.57	+0.4
2,892	+		GFF7414	0.57	+0.3
2,892	+		GFF7414	0.57	+0.3
2,892	+		GFF7414	0.57	+1.8
2,892	+		GFF7414	0.57	-0.0
2,893	-		GFF7414	0.57	-1.0
2,893	-		GFF7414	0.57	-0.5
2,893	-		GFF7414	0.57	-1.6
2,893	-		GFF7414	0.57	+0.8
2,893	-		GFF7414	0.57	-2.5
2,893	-		GFF7414	0.57	-0.2
2,893	-		GFF7414	0.57	-0.2
2,893	-		GFF7414	0.57	-0.1
2,965	+		GFF7414	0.72	+0.0
2,965	+		GFF7414	0.72	+0.9
2,965	+		GFF7414	0.72	-0.4
2,965	+		GFF7414	0.72	+1.2
2,966	-		GFF7414	0.72	-0.1
2,966	-		GFF7414	0.72	-1.1
2,966	-		GFF7414	0.72	-1.7
2,995	+		GFF7414	0.78	+0.6
2,995	+		GFF7414	0.78	-2.1
2,995	+		GFF7414	0.78	-0.2
2,995	+		GFF7414	0.78	+0.7
2,996	-		GFF7414	0.78	-0.6
2,996	-		GFF7414	0.78	-1.5
2,996	-		GFF7414	0.78	-0.4
2,996	-		GFF7414	0.78	+0.2
2,996	-		GFF7414	0.78	-0.2
2,996	-		GFF7414	0.78	-1.4
3,055	+				-0.5
3,055	+				+0.2
3,055	+				-0.5
3,055	+				-2.5
3,055	+				-1.8
3,055	+				-0.3
3,055	+				+0.7
3,055	+				+0.5
3,055	+				-0.1
3,055	+				-0.4
3,055	+				+1.0
3,056	-				-0.2
3,056	-				-0.8
3,056	-				+0.7
3,056	-				+0.1
3,056	-				-0.2
3,056	-				-0.3
3,056	-				-0.3
3,056	-				-0.3
3,056	-				-0.1
3,056	-				-0.4
3,056	-				-0.9
3,056	-				-0.7
3,077	+				+1.2
3,077	+				-0.8
3,077	+				-0.1
3,077	+				-0.8
3,077	+				-0.3
3,077	+				+0.3
3,077	+				+0.8
3,078	-				-2.7
3,078	-				+0.3
3,078	-				+0.1
3,088	+				+0.3
3,088	+				-1.2
3,088	+				-0.9
3,088	+				+0.1
3,088	+				-0.1
3,089	-				+0.7
3,089	-				-0.9
3,089	-				+0.1
3,089	-				-1.7
3,089	-				-0.5
3,089	-				-0.5
3,089	-				-0.2
3,089	-				+0.3
3,089	-				-0.4
3,089	-				-0.4
3,089	-				-0.4
3,089	-				-0.2
3,089	-				+0.1
3,089	-				-1.0
3,089	-				-0.2
3,157	+				+0.3
3,157	+				-2.4
3,157	+				-0.2
3,157	+				-0.4
3,157	+				-1.4
3,157	+				-0.0
3,157	+				-0.8
3,157	+				-0.6
3,157	+				-0.5
3,158	-				+0.1
3,158	-				-0.9
3,158	-				-0.2
3,158	-				-1.1
3,158	-				-0.1
3,158	-				-0.0
3,158	-				-0.4
3,194	-				+0.1
3,211	+				-0.3
3,211	+				+0.0
3,257	+				+0.8
3,257	+				-1.6
3,258	-				+0.3
3,288	+				-0.2
3,288	+				+1.0
3,288	+				-0.0
3,288	+				+0.1
3,289	-				-1.5
3,289	-				+0.6
3,289	-				-0.3
3,289	-				-0.4
3,289	-				+0.1
3,294	+				-1.1
3,294	+				-0.2
3,294	+				-0.1
3,294	+				-0.2
3,295	-				+1.1
3,295	-				-0.7
3,351	+				-0.7
3,430	+				-0.4
3,430	+				+0.1
3,431	-				-0.9
3,508	+		GFF7415	0.15	-0.7
3,508	+		GFF7415	0.15	-0.4
3,508	+		GFF7415	0.15	-0.5
3,509	-		GFF7415	0.15	+0.6
3,509	-		GFF7415	0.15	-0.3
3,645	+		GFF7415	0.33	+0.1
3,645	+		GFF7415	0.33	-1.7
3,645	+		GFF7415	0.33	-0.2
3,645	+		GFF7415	0.33	+0.1
3,645	+		GFF7415	0.33	-1.4
3,645	+		GFF7415	0.33	-0.2
3,645	+		GFF7415	0.33	-0.8
3,645	+		GFF7415	0.33	-0.5
3,645	+		GFF7415	0.33	-0.1
3,645	+		GFF7415	0.33	-0.7
3,645	+		GFF7415	0.33	-0.4
3,645	+		GFF7415	0.33	-0.8
3,645	+		GFF7415	0.33	-0.1
3,645	+		GFF7415	0.33	+0.5
3,645	+		GFF7415	0.33	+0.0
3,646	-		GFF7415	0.33	-0.8
3,646	-		GFF7415	0.33	+2.1
3,646	-		GFF7415	0.33	-0.1
3,646	-		GFF7415	0.33	-0.6
3,646	-		GFF7415	0.33	-0.3
3,646	-		GFF7415	0.33	-0.8
3,646	-		GFF7415	0.33	+0.3
3,646	-		GFF7415	0.33	-0.8
3,646	-		GFF7415	0.33	-0.8
3,646	-		GFF7415	0.33	-0.6
3,646	-		GFF7415	0.33	-0.5
3,646	-		GFF7415	0.33	-1.8
3,646	-		GFF7415	0.33	-0.2
3,652	+		GFF7415	0.33	-0.3
3,706	+		GFF7415	0.40	+1.3
3,707	-		GFF7415	0.40	-1.3
3,707	-		GFF7415	0.40	+1.2
3,726	+		GFF7415	0.43	+0.1
3,726	+		GFF7415	0.43	-0.5
3,726	+		GFF7415	0.43	+0.3
3,726	+		GFF7415	0.43	-1.2
3,726	+		GFF7415	0.43	-0.4
3,726	+		GFF7415	0.43	-0.6
3,726	+		GFF7415	0.43	-0.6
3,726	+		GFF7415	0.43	-0.3
3,726	+		GFF7415	0.43	-0.9
3,726	+		GFF7415	0.43	+0.4
3,727	-		GFF7415	0.43	-0.1
3,765	+		GFF7415	0.48	+0.0
3,765	+		GFF7415	0.48	+0.0
3,765	+		GFF7415	0.48	-0.8
3,766	-		GFF7415	0.48	+0.8
3,766	-		GFF7415	0.48	+0.2
3,883	-		GFF7415	0.63	+0.3
3,947	+		GFF7415	0.71	-0.7
3,947	+		GFF7415	0.71	+0.2
3,947	+		GFF7415	0.71	+0.9
3,948	-		GFF7415	0.71	+1.7
3,948	-		GFF7415	0.71	+1.3
3,964	+		GFF7415	0.73	-1.5
3,973	+		GFF7415	0.74	+0.2
3,973	+		GFF7415	0.74	+0.8
3,974	-		GFF7415	0.74	+0.2
3,974	-		GFF7415	0.74	-0.3
3,994	+		GFF7415	0.77	-0.9
3,994	+		GFF7415	0.77	-0.5
4,047	-		GFF7415	0.83	-0.5
4,067	+		GFF7415	0.86	+1.0
4,068	-		GFF7415	0.86	-1.2
4,068	-		GFF7415	0.86	-1.1
4,068	-		GFF7415	0.86	+1.6