Strain Fitness in Variovorax sp. SCN45 around GFF7398

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
1,468	+		GFF7396	0.57	+0.6
1,801	+		GFF7396	0.80	-1.3
1,801	+		GFF7396	0.80	-0.4
1,927	+		GFF7396	0.88	-0.7
1,927	+		GFF7396	0.88	+0.2
1,927	+		GFF7396	0.88	-0.2
1,928	-		GFF7396	0.88	+0.5
2,300	+		GFF7397	0.75	+1.5
2,300	+		GFF7397	0.75	+0.1
2,300	+		GFF7397	0.75	-0.7
2,300	+		GFF7397	0.75	+0.3
2,300	+		GFF7397	0.75	-0.6
2,300	+		GFF7397	0.75	-0.5
2,300	+		GFF7397	0.75	-0.9
2,301	-		GFF7397	0.75	-1.6
2,301	-		GFF7397	0.75	+0.2
2,301	-		GFF7397	0.75	+0.3
2,345	-				+0.2
2,446	+				-0.9
2,470	+				+0.9
2,498	-		GFF7398	0.10	-0.0
2,779	+		GFF7398	0.32	+0.5
2,867	-		GFF7398	0.39	-0.8
3,113	-		GFF7398	0.58	-0.7
3,181	+		GFF7398	0.64	+0.2
3,429	+		GFF7398	0.83	-1.0
3,437	-		GFF7398	0.84	-0.2
3,632	+				+0.5
3,706	+				-1.0
3,707	-				-0.3
3,821	-		GFF7399	0.13	-0.9
3,830	-		GFF7399	0.13	+0.0
3,833	-		GFF7399	0.14	+0.1
3,833	-		GFF7399	0.14	-0.8
3,833	-		GFF7399	0.14	-0.5
3,833	-		GFF7399	0.14	-0.1
3,836	-		GFF7399	0.14	+0.5
3,916	+		GFF7399	0.20	+0.9
3,923	-		GFF7399	0.20	+0.8
3,961	-		GFF7399	0.23	+0.1
4,210	+		GFF7399	0.43	-0.1
4,211	-		GFF7399	0.43	-0.2