Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7395 and GFF7396 are separated by 29 nucleotides GFF7396 and GFF7397 overlap by 15 nucleotides GFF7397 and GFF7398 overlap by 4 nucleotides
GFF7395 - T1SS secreted agglutinin RTX, at 2 to 574
GFF7395
GFF7396 - Tryptophan halogenase, at 604 to 2,106
GFF7396
GFF7397 - Flagellar transcriptional activator FlhD, at 2,092 to 2,370
GFF7397
GFF7398 - no description, at 2,367 to 3,647
GFF7398
Position (kb) 0
1
2
3 Strain fitness (log2 ratio) -2
-1
0
1 at 0.104 kb on - strand, within GFF7395 at 0.106 kb on + strand, within GFF7395 at 0.106 kb on + strand, within GFF7395 at 0.212 kb on + strand, within GFF7395 at 0.213 kb on - strand, within GFF7395 at 0.213 kb on - strand, within GFF7395 at 0.372 kb on - strand, within GFF7395 at 0.420 kb on - strand, within GFF7395 at 0.488 kb on + strand, within GFF7395 at 0.505 kb on + strand, within GFF7395 at 0.505 kb on + strand, within GFF7395 at 0.597 kb on + strand at 0.597 kb on + strand at 0.597 kb on + strand at 0.597 kb on + strand at 0.597 kb on + strand at 0.598 kb on - strand at 0.598 kb on - strand at 0.599 kb on + strand at 0.599 kb on + strand at 0.599 kb on + strand at 0.599 kb on + strand at 0.599 kb on + strand at 0.599 kb on + strand at 0.599 kb on + strand at 0.599 kb on + strand at 0.600 kb on - strand at 0.600 kb on - strand at 0.600 kb on - strand at 0.600 kb on - strand at 0.600 kb on - strand at 0.600 kb on - strand at 0.600 kb on - strand at 0.600 kb on - strand at 0.603 kb on + strand at 0.603 kb on + strand at 0.603 kb on + strand at 0.604 kb on - strand at 0.893 kb on - strand, within GFF7396 at 0.895 kb on + strand, within GFF7396 at 0.895 kb on + strand, within GFF7396 at 0.895 kb on + strand, within GFF7396 at 0.895 kb on + strand, within GFF7396 at 1.000 kb on + strand, within GFF7396 at 1.000 kb on + strand, within GFF7396 at 1.005 kb on - strand, within GFF7396 at 1.126 kb on + strand, within GFF7396 at 1.468 kb on + strand, within GFF7396 at 1.801 kb on + strand, within GFF7396 at 1.801 kb on + strand, within GFF7396 at 1.927 kb on + strand, within GFF7396 at 1.927 kb on + strand, within GFF7396 at 1.927 kb on + strand, within GFF7396 at 1.928 kb on - strand, within GFF7396 at 2.300 kb on + strand, within GFF7397 at 2.300 kb on + strand, within GFF7397 at 2.300 kb on + strand, within GFF7397 at 2.300 kb on + strand, within GFF7397 at 2.300 kb on + strand, within GFF7397 at 2.300 kb on + strand, within GFF7397 at 2.300 kb on + strand, within GFF7397 at 2.301 kb on - strand, within GFF7397 at 2.301 kb on - strand, within GFF7397 at 2.301 kb on - strand, within GFF7397 at 2.345 kb on - strand at 2.446 kb on + strand at 2.470 kb on + strand at 2.498 kb on - strand, within GFF7398 at 2.779 kb on + strand, within GFF7398 at 2.867 kb on - strand, within GFF7398
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 104 - GFF7395 0.18 +0.3 106 + GFF7395 0.18 +0.3 106 + GFF7395 0.18 +0.7 212 + GFF7395 0.37 -0.2 213 - GFF7395 0.37 +0.2 213 - GFF7395 0.37 +0.1 372 - GFF7395 0.65 -1.5 420 - GFF7395 0.73 +0.3 488 + GFF7395 0.85 -0.1 505 + GFF7395 0.88 -0.1 505 + GFF7395 0.88 +0.2 597 + -0.2 597 + -0.2 597 + -0.2 597 + -0.4 597 + +0.7 598 - -0.4 598 - -1.7 599 + +0.4 599 + +1.1 599 + +0.5 599 + -0.1 599 + -1.7 599 + -0.8 599 + +0.4 599 + -0.1 600 - +0.3 600 - -0.6 600 - +0.6 600 - +0.1 600 - +0.7 600 - -0.2 600 - -0.5 600 - -1.1 603 + +0.1 603 + -0.1 603 + +0.0 604 - +0.4 893 - GFF7396 0.19 -0.6 895 + GFF7396 0.19 +1.0 895 + GFF7396 0.19 -2.0 895 + GFF7396 0.19 +0.8 895 + GFF7396 0.19 -0.3 1,000 + GFF7396 0.26 +0.0 1,000 + GFF7396 0.26 +0.9 1,005 - GFF7396 0.27 -0.6 1,126 + GFF7396 0.35 +0.1 1,468 + GFF7396 0.57 +0.6 1,801 + GFF7396 0.80 -1.3 1,801 + GFF7396 0.80 -0.4 1,927 + GFF7396 0.88 -0.7 1,927 + GFF7396 0.88 +0.2 1,927 + GFF7396 0.88 -0.2 1,928 - GFF7396 0.88 +0.5 2,300 + GFF7397 0.75 +1.5 2,300 + GFF7397 0.75 +0.1 2,300 + GFF7397 0.75 -0.7 2,300 + GFF7397 0.75 +0.3 2,300 + GFF7397 0.75 -0.6 2,300 + GFF7397 0.75 -0.5 2,300 + GFF7397 0.75 -0.9 2,301 - GFF7397 0.75 -1.6 2,301 - GFF7397 0.75 +0.2 2,301 - GFF7397 0.75 +0.3 2,345 - +0.2 2,446 + -0.9 2,470 + +0.9 2,498 - GFF7398 0.10 -0.0 2,779 + GFF7398 0.32 +0.5 2,867 - GFF7398 0.39 -0.8
Or see this region's nucleotide sequence