Strain Fitness in Variovorax sp. SCN45 around GFF7362

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
8,426	-		GFF7360	0.58	+0.2
8,627	+		GFF7360	0.76	+0.6
8,628	-		GFF7360	0.76	+1.5
8,690	-		GFF7360	0.81	-0.7
8,694	+		GFF7360	0.82	+0.0
8,749	+		GFF7360	0.87	+0.4
8,749	+		GFF7360	0.87	+0.0
8,843	-				-0.3
8,913	+				-0.4
8,914	-				+1.5
8,917	-				+0.5
8,969	+				-0.4
9,059	+		GFF7361	0.21	+0.2
9,106	-		GFF7361	0.32	+0.7
9,106	-		GFF7361	0.32	-0.0
9,106	-		GFF7361	0.32	-1.1
9,106	-		GFF7361	0.32	-0.3
9,106	-		GFF7361	0.32	+1.8
9,106	-		GFF7361	0.32	+1.1
9,108	-		GFF7361	0.32	+0.3
9,108	-		GFF7361	0.32	-1.0
9,469	+				+0.7
9,937	+		GFF7362	0.67	-0.1
9,937	+		GFF7362	0.67	-0.9
10,179	+				+0.5
10,179	+				+1.3
10,180	-				+0.4
10,363	-				-0.3
10,367	-				-0.1
10,390	+				-2.0
10,390	+				-0.4
10,390	+				+0.5
10,390	+				-0.5
10,391	-				-1.2
10,391	-				+1.1
10,391	-				+0.0
10,648	+		GFF7363	0.26	+0.1
10,648	+		GFF7363	0.26	+1.1
10,683	+		GFF7363	0.30	-0.2
10,683	+		GFF7363	0.30	+0.1
10,683	+		GFF7363	0.30	-0.2
10,683	+		GFF7363	0.30	-0.6
10,684	-		GFF7363	0.30	-0.4
10,704	+		GFF7363	0.32	+0.3
10,719	+		GFF7363	0.34	-0.5
10,720	-		GFF7363	0.34	-0.5
10,720	-		GFF7363	0.34	+0.5
10,800	+		GFF7363	0.42	-1.4
10,819	-		GFF7363	0.44	+0.5
10,857	+		GFF7363	0.48	-0.6
10,857	+		GFF7363	0.48	-0.4
10,857	+		GFF7363	0.48	+1.5
10,857	+		GFF7363	0.48	-0.6
10,857	+		GFF7363	0.48	+0.8
10,857	+		GFF7363	0.48	+0.2
10,859	+		GFF7363	0.48	+1.2
10,860	-		GFF7363	0.48	+1.6