Strain Fitness in Variovorax sp. SCN45 around GFF7350

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7348 and GFF7349 are separated by 63 nucleotidesGFF7349 and GFF7350 are separated by 9 nucleotides GFF7348 - Oxidoreductase, aldo/keto reductase family, at 17,218 to 18,069 GFF7348 GFF7349 - no description, at 18,133 to 18,264 GFF7349 GFF7350 - Short-chain dehydrogenase/oxidoreductase, at 18,274 to 19,086 GFF7350 Position (kb) 18 19 20Strain fitness (log2 ratio) -1 0 1at 17.515 kb on + strand, within GFF7348at 17.516 kb on - strand, within GFF7348at 17.690 kb on + strand, within GFF7348at 18.984 kb on - strand, within GFF7350at 19.079 kb on - strandat 19.084 kb on + strandat 19.084 kb on + strandat 19.115 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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17,515 + GFF7348 0.35 -0.3
17,516 - GFF7348 0.35 -1.3
17,690 + GFF7348 0.55 +0.7
18,984 - GFF7350 0.87 +0.4
19,079 - +0.3
19,084 + -1.3
19,084 + -0.3
19,115 - +0.3

Or see this region's nucleotide sequence