Strain Fitness in Variovorax sp. SCN45 around GFF7349

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF7347 and GFF7348 are separated by 56 nucleotidesGFF7348 and GFF7349 are separated by 63 nucleotidesGFF7349 and GFF7350 are separated by 9 nucleotides GFF7347 - Periplasmic aromatic aldehyde oxidoreductase, molybdenum binding subunit YagR, at 14,966 to 17,161 GFF7347 GFF7348 - Oxidoreductase, aldo/keto reductase family, at 17,218 to 18,069 GFF7348 GFF7349 - no description, at 18,133 to 18,264 GFF7349 GFF7350 - Short-chain dehydrogenase/oxidoreductase, at 18,274 to 19,086 GFF7350 Position (kb) 18 19Strain fitness (log2 ratio) -1 0 1at 17.515 kb on + strand, within GFF7348at 17.516 kb on - strand, within GFF7348at 17.690 kb on + strand, within GFF7348at 18.984 kb on - strand, within GFF7350at 19.079 kb on - strandat 19.084 kb on + strandat 19.084 kb on + strandat 19.115 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
remove
17,515 + GFF7348 0.35 -0.3
17,516 - GFF7348 0.35 -1.3
17,690 + GFF7348 0.55 +0.7
18,984 - GFF7350 0.87 +0.4
19,079 - +0.3
19,084 + -1.3
19,084 + -0.3
19,115 - +0.3

Or see this region's nucleotide sequence