Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF730 and GFF731 are separated by 185 nucleotides GFF731 and GFF732 are separated by 35 nucleotides GFF732 and GFF733 are separated by 332 nucleotides GFF733 and GFF734 are separated by 149 nucleotides
GFF730 - Class A beta-lactamase (EC 3.5.2.6), at 787,834 to 788,724
GFF730
GFF731 - Transcriptional regulator, ArsR family, at 788,910 to 789,251
GFF731
GFF732 - Ligand-binding SRPBCC domain protein family, at 789,287 to 789,829
GFF732
GFF733 - no description, at 790,162 to 790,422
GFF733
GFF734 - no description, at 790,572 to 791,159
GFF734
Position (kb) 789
790 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 788.418 kb on - strand, within GFF730 at 788.782 kb on - strand at 788.897 kb on + strand at 788.921 kb on - strand at 788.944 kb on + strand at 789.174 kb on + strand, within GFF731 at 789.175 kb on - strand, within GFF731 at 789.175 kb on - strand, within GFF731 at 789.177 kb on + strand, within GFF731 at 789.177 kb on + strand, within GFF731 at 789.178 kb on - strand, within GFF731 at 789.250 kb on - strand at 789.250 kb on - strand at 789.386 kb on + strand, within GFF732 at 789.929 kb on + strand at 789.997 kb on + strand at 789.997 kb on + strand at 789.998 kb on - strand at 789.998 kb on - strand at 789.998 kb on - strand at 789.998 kb on - strand at 790.078 kb on - strand at 790.144 kb on + strand at 790.179 kb on - strand at 790.392 kb on + strand, within GFF733 at 790.393 kb on - strand, within GFF733 at 790.497 kb on + strand at 790.497 kb on + strand at 790.498 kb on - strand at 790.498 kb on - strand at 790.501 kb on + strand at 790.501 kb on + strand at 790.542 kb on - strand at 790.542 kb on - strand at 790.561 kb on - strand at 790.622 kb on - strand at 790.622 kb on - strand at 790.626 kb on - strand at 790.665 kb on + strand, within GFF734 at 790.701 kb on + strand, within GFF734 at 790.701 kb on + strand, within GFF734 at 790.701 kb on + strand, within GFF734 at 790.702 kb on - strand, within GFF734 at 790.702 kb on - strand, within GFF734 at 790.707 kb on + strand, within GFF734 at 790.707 kb on + strand, within GFF734 at 790.707 kb on + strand, within GFF734 at 790.707 kb on + strand, within GFF734 at 790.707 kb on + strand, within GFF734 at 790.708 kb on - strand, within GFF734 at 790.708 kb on - strand, within GFF734 at 790.708 kb on - strand, within GFF734 at 790.708 kb on - strand, within GFF734 at 790.708 kb on - strand, within GFF734 at 790.790 kb on - strand, within GFF734 at 790.790 kb on - strand, within GFF734
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 788,418 - GFF730 0.66 -0.1 788,782 - -0.0 788,897 + +0.2 788,921 - +0.6 788,944 + -0.7 789,174 + GFF731 0.77 -0.4 789,175 - GFF731 0.77 +1.2 789,175 - GFF731 0.77 +0.0 789,177 + GFF731 0.78 -0.1 789,177 + GFF731 0.78 -0.8 789,178 - GFF731 0.78 +0.5 789,250 - +1.2 789,250 - +0.2 789,386 + GFF732 0.18 +0.0 789,929 + -0.0 789,997 + -0.5 789,997 + -0.4 789,998 - +0.4 789,998 - +1.0 789,998 - -0.1 789,998 - -0.8 790,078 - -0.1 790,144 + +0.0 790,179 - -0.4 790,392 + GFF733 0.88 -0.9 790,393 - GFF733 0.89 -0.1 790,497 + -0.9 790,497 + -1.7 790,498 - -2.8 790,498 - -0.4 790,501 + -0.5 790,501 + -0.3 790,542 - +0.4 790,542 - +0.1 790,561 - +0.0 790,622 - +1.0 790,622 - -0.4 790,626 - +0.4 790,665 + GFF734 0.16 +0.7 790,701 + GFF734 0.22 -0.3 790,701 + GFF734 0.22 -0.4 790,701 + GFF734 0.22 +0.0 790,702 - GFF734 0.22 -0.2 790,702 - GFF734 0.22 -0.0 790,707 + GFF734 0.23 -0.1 790,707 + GFF734 0.23 -0.6 790,707 + GFF734 0.23 -0.2 790,707 + GFF734 0.23 -0.3 790,707 + GFF734 0.23 +0.4 790,708 - GFF734 0.23 -0.2 790,708 - GFF734 0.23 -1.4 790,708 - GFF734 0.23 +0.2 790,708 - GFF734 0.23 +0.1 790,708 - GFF734 0.23 +0.2 790,790 - GFF734 0.37 -2.5 790,790 - GFF734 0.37 -0.2
Or see this region's nucleotide sequence