Strain Fitness in Variovorax sp. SCN45 around GFF7308

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
1,561	+		GFF7306	0.42	+1.0
1,561	+		GFF7306	0.42	+1.0
1,561	+		GFF7306	0.42	-1.3
1,561	+		GFF7306	0.42	+1.2
1,561	+		GFF7306	0.42	+0.6
1,561	+		GFF7306	0.42	+0.9
1,561	+		GFF7306	0.42	+0.6
1,561	+		GFF7306	0.42	+2.5
1,562	-		GFF7306	0.42	+1.0
1,562	-		GFF7306	0.42	+0.6
1,562	-		GFF7306	0.42	+0.4
1,562	-		GFF7306	0.42	-0.4
1,562	-		GFF7306	0.42	+1.7
1,562	-		GFF7306	0.42	+1.1
1,562	-		GFF7306	0.42	+1.0
1,562	-		GFF7306	0.42	+0.9
1,562	-		GFF7306	0.42	+1.0
1,562	-		GFF7306	0.42	+0.2
1,562	-		GFF7306	0.42	+1.1
1,562	-		GFF7306	0.42	+0.1
1,593	+		GFF7306	0.46	+2.0
1,593	+		GFF7306	0.46	+0.9
1,594	-		GFF7306	0.46	+1.2
1,667	+		GFF7306	0.55	+0.5
1,667	+		GFF7306	0.55	+0.9
1,667	+		GFF7306	0.55	+0.9
1,667	+		GFF7306	0.55	+0.8
1,667	+		GFF7306	0.55	+0.4
1,667	+		GFF7306	0.55	+0.7
1,668	-		GFF7306	0.55	+1.4
1,668	-		GFF7306	0.55	+0.4
1,668	-		GFF7306	0.55	+0.9
1,668	-		GFF7306	0.55	+0.2
1,668	-		GFF7306	0.55	+1.0
1,668	-		GFF7306	0.55	+0.0
1,668	-		GFF7306	0.55	+0.4
1,668	-		GFF7306	0.55	+0.9
1,717	+		GFF7306	0.62	+1.1
1,717	+		GFF7306	0.62	+0.8
1,717	+		GFF7306	0.62	+0.4
1,717	+		GFF7306	0.62	+0.7
1,717	+		GFF7306	0.62	+1.7
1,717	+		GFF7306	0.62	+0.8
1,718	-		GFF7306	0.62	+2.0
1,718	-		GFF7306	0.62	+1.4
1,718	-		GFF7306	0.62	-0.8
1,718	-		GFF7306	0.62	+0.7
2,422	-				-0.4
2,422	-				-0.2
2,422	-				-0.5
2,422	-				-0.2
2,422	-				-0.6
2,659	+		GFF7308	0.18	+0.8
2,659	+		GFF7308	0.18	+0.1
2,660	-		GFF7308	0.18	-0.0
3,067	+		GFF7308	0.51	+0.1
3,068	-		GFF7308	0.51	-0.2
3,399	+		GFF7308	0.78	-0.3
3,400	-		GFF7308	0.79	+0.5
3,400	-		GFF7308	0.79	-0.0
3,478	+		GFF7308	0.85	-1.3
3,568	+				-2.0
3,568	+				-0.3
3,568	+				-0.3
3,568	+				-0.2
3,568	+				-0.2
3,568	+				-0.7
3,568	+				-0.6
3,568	+				-0.3
3,568	+				+0.1
3,569	-				+0.6
3,569	-				+1.7
3,569	-				+0.5
3,569	-				+0.5
3,569	-				-0.7
3,569	-				-1.3
3,569	-				+0.1
3,569	-				+0.5
3,569	-				-0.0
3,569	-				+0.9
3,569	-				+0.1
3,569	-				-0.4
3,571	+				-1.2
3,571	+				-0.6
3,571	+				-0.1
3,571	+				+0.1
3,571	+				+0.0
3,571	+				-0.6
3,571	+				-0.3
3,571	+				+0.1
3,571	+				+0.2
3,572	-				+1.0
3,572	-				+0.6
3,572	-				+0.1
3,572	-				+1.4
3,572	-				+0.7
3,572	-				-0.6
3,665	+				-1.3
3,665	+				+0.1
3,665	+				+1.2
3,665	+				-0.4
3,665	+				-0.8
3,665	+				-0.5
3,665	+				+1.2
3,665	+				+0.3
3,665	+				+1.1
3,666	-				+0.7
3,666	-				+0.0
3,666	-				-1.6
3,666	-				+0.3
3,666	-				+0.6
3,666	-				+0.3
3,666	-				+0.6
3,666	-				-0.9
3,666	-				-0.3
3,668	+				+0.7
3,668	+				-0.4
3,669	-				-0.0
3,669	-				-0.4
3,669	-				-0.3
3,669	-				-1.0
3,669	-				+0.5
3,669	-				+0.0
3,669	-				+0.1
3,724	+				+0.7
3,724	+				-1.6
3,724	+				-0.4
3,724	+				+0.7
3,724	+				-0.4
3,724	+				-1.0
3,724	+				+0.2
3,724	+				-0.4
3,724	+				+0.2
3,725	-				-0.2
3,725	-				-0.6
3,725	-				-0.1
3,725	-				+1.4
3,727	+				+0.6
3,727	+				-0.6
3,728	-				-0.8
3,728	-				-0.9
3,728	-				-1.3
3,728	-				+0.4
3,728	-				+0.5
3,728	-				+0.0
3,728	-				-0.1
3,728	-				+0.3
3,728	-				+0.5
3,749	-				-0.4
3,750	+				-1.0
3,750	+				-0.2
3,750	+				+0.3
3,751	-				+0.2
3,751	-				-0.5
3,751	-				-0.2
3,762	-				+0.1
4,149	+		GFF7309	0.41	+0.8
4,149	+		GFF7309	0.41	+0.3
4,150	-		GFF7309	0.41	+0.5
4,150	-		GFF7309	0.41	+1.0
4,150	-		GFF7309	0.41	+0.7
4,150	-		GFF7309	0.41	-0.2
4,150	-		GFF7309	0.41	-0.3
4,150	-		GFF7309	0.41	-0.3
4,161	+		GFF7309	0.42	-0.1
4,162	-		GFF7309	0.42	-0.4
4,407	+		GFF7309	0.68	+0.1
4,407	+		GFF7309	0.68	+0.8
4,408	-		GFF7309	0.68	-1.2
4,408	-		GFF7309	0.68	+0.6
4,408	-		GFF7309	0.68	+0.8
4,452	+		GFF7309	0.73	-1.1
4,452	+		GFF7309	0.73	+0.1
4,452	+		GFF7309	0.73	-0.3
4,452	+		GFF7309	0.73	-0.2
4,452	+		GFF7309	0.73	-0.0
4,452	+		GFF7309	0.73	+0.3
4,453	-		GFF7309	0.73	-0.1
4,453	-		GFF7309	0.73	-0.5
4,453	-		GFF7309	0.73	+0.5
4,453	-		GFF7309	0.73	-0.5
4,626	+				-0.5
4,626	+				+0.3
4,626	+				+0.5
4,626	+				-0.6
4,626	+				+2.0
4,626	+				-0.6
4,626	+				+0.1
4,626	+				+0.7
4,626	+				-0.2
4,626	+				-1.0
4,626	+				+0.2
4,626	+				+0.1
4,626	+				-2.0
4,626	+				+0.8
4,626	+				+0.4
4,626	+				-1.0
4,626	+				-1.1
4,626	+				-0.2
4,626	+				+0.3
4,626	+				-0.3
4,626	+				+0.3
4,626	+				-0.9
4,626	+				-2.0
4,626	+				+0.2
4,627	-				+0.1
4,627	-				+0.2
4,627	-				-2.2
4,627	-				+0.2
4,627	-				-0.0
4,627	-				-0.5
4,627	-				-1.7
4,627	-				-0.2
4,627	-				+0.1
4,627	-				-1.9
4,627	-				-0.1
4,627	-				-0.1
4,627	-				+0.7
4,627	-				-1.1
4,627	-				-0.0
4,627	-				+1.4
4,627	-				+0.4
4,627	-				-2.1
4,627	-				-0.4
4,627	-				-0.8
4,627	-				+0.9
4,635	+				+0.9
4,635	+				+0.4
4,635	+				+0.2
4,635	+				-0.2
4,635	+				-0.4
4,636	-				+2.0
4,636	-				+0.5
4,636	-				+0.3
4,636	-				-0.1
4,636	-				+0.7
4,641	+				-0.0
4,641	+				-0.2
4,642	-				+0.1
4,653	+				+0.3
4,654	-				-0.8
4,654	-				+0.1