Strain Fitness in Variovorax sp. SCN45 around GFF7236

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
16,254	+		GFF7235	0.35	-0.4
16,255	-		GFF7235	0.35	-0.1
16,269	+		GFF7235	0.36	+0.6
16,479	+		GFF7235	0.51	+3.3
16,497	+		GFF7235	0.53	-0.1
16,497	+		GFF7235	0.53	+0.7
16,497	+		GFF7235	0.53	-0.6
16,497	+		GFF7235	0.53	-0.7
16,497	+		GFF7235	0.53	+2.0
16,498	-		GFF7235	0.53	+0.2
16,498	-		GFF7235	0.53	-0.3
16,548	+		GFF7235	0.56	+0.0
16,549	-		GFF7235	0.56	+0.0
16,657	-		GFF7235	0.64	-0.3
16,657	-		GFF7235	0.64	+0.1
16,870	-		GFF7235	0.80	+0.8
16,893	+		GFF7235	0.82	+0.7
16,893	+		GFF7235	0.82	-1.7
16,893	+		GFF7235	0.82	+0.0
16,893	+		GFF7235	0.82	+1.1
17,019	+				-1.1
17,019	+				+0.1
17,019	+				-0.4
17,019	+				+0.3
17,019	+				+1.4
17,055	-				+0.9
17,128	+				-1.3
17,583	-		GFF7236	0.45	-1.2
18,014	+				-1.1
18,066	+				+0.5
18,067	-				-1.1
18,180	-				+0.1
18,415	+		GFF7237	0.15	-0.6
18,415	+		GFF7237	0.15	-1.5
19,057	+		GFF7237	0.56	-0.3
19,057	+		GFF7237	0.56	-0.2
19,058	-		GFF7237	0.56	-0.5