Strain Fitness in Variovorax sp. SCN45 around GFF7220

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7220 and GFF7221 are separated by 288 nucleotides GFF7220 - no description, at 63 to 191 GFF7220 GFF7221 - Protein lysine acetyltransferase Pat (EC 2.3.1.-), at 480 to 3,188 GFF7221 Position (kb) 0 1Strain fitness (log2 ratio) -1 0 1at 0.059 kb on + strandat 0.059 kb on + strandat 0.059 kb on + strandat 0.059 kb on + strandat 0.307 kb on + strandat 0.307 kb on + strandat 0.308 kb on - strandat 0.308 kb on - strandat 0.482 kb on - strandat 0.482 kb on - strandat 0.859 kb on + strand, within GFF7221

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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59 + +0.6
59 + -0.9
59 + +0.6
59 + +0.2
307 + -0.3
307 + +1.0
308 - -0.5
308 - -0.5
482 - +0.3
482 - +0.6
859 + GFF7221 0.14 -0.3

Or see this region's nucleotide sequence