Strain Fitness in Variovorax sp. SCN45 around GFF7155

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF7154 and GFF7155 overlap by 4 nucleotidesGFF7155 and GFF7156 are separated by 123 nucleotides GFF7154 - Toxin HigB / Protein kinase domain of HipA, at 18,782 to 20,107 GFF7154 GFF7155 - hypothetical protein, at 20,104 to 20,565 GFF7155 GFF7156 - hypothetical protein, at 20,689 to 21,693 GFF7156 Position (kb) 20 21Strain fitness (log2 ratio) -2 -1 0 1 2at 19.116 kb on + strand, within GFF7154at 19.116 kb on + strand, within GFF7154at 19.116 kb on + strand, within GFF7154at 19.116 kb on + strand, within GFF7154at 19.116 kb on + strand, within GFF7154at 19.116 kb on + strand, within GFF7154at 19.117 kb on - strand, within GFF7154at 19.117 kb on - strand, within GFF7154at 19.117 kb on - strand, within GFF7154at 19.117 kb on - strand, within GFF7154at 19.117 kb on - strand, within GFF7154at 19.117 kb on - strand, within GFF7154at 19.117 kb on - strand, within GFF7154at 19.117 kb on - strand, within GFF7154at 19.117 kb on - strand, within GFF7154at 19.117 kb on - strand, within GFF7154at 19.118 kb on + strand, within GFF7154at 19.119 kb on - strand, within GFF7154at 19.119 kb on - strand, within GFF7154at 19.134 kb on + strand, within GFF7154at 19.134 kb on + strand, within GFF7154at 19.134 kb on + strand, within GFF7154at 19.134 kb on + strand, within GFF7154at 19.134 kb on + strand, within GFF7154at 19.134 kb on + strand, within GFF7154at 19.134 kb on + strand, within GFF7154at 19.134 kb on + strand, within GFF7154at 19.134 kb on + strand, within GFF7154at 19.134 kb on + strand, within GFF7154at 19.134 kb on + strand, within GFF7154at 19.135 kb on - strand, within GFF7154at 19.135 kb on - strand, within GFF7154at 19.305 kb on + strand, within GFF7154at 19.305 kb on + strand, within GFF7154at 19.305 kb on + strand, within GFF7154at 19.305 kb on + strand, within GFF7154at 19.305 kb on + strand, within GFF7154at 19.305 kb on + strand, within GFF7154at 19.305 kb on + strand, within GFF7154at 19.305 kb on + strand, within GFF7154at 19.305 kb on + strand, within GFF7154at 19.306 kb on - strand, within GFF7154at 19.306 kb on - strand, within GFF7154at 19.306 kb on - strand, within GFF7154at 19.306 kb on - strand, within GFF7154at 19.306 kb on - strand, within GFF7154at 19.306 kb on - strand, within GFF7154at 19.657 kb on + strand, within GFF7154at 19.657 kb on + strand, within GFF7154at 19.657 kb on + strand, within GFF7154at 19.926 kb on + strand, within GFF7154at 19.926 kb on + strand, within GFF7154at 19.926 kb on + strand, within GFF7154at 19.926 kb on + strand, within GFF7154at 19.926 kb on + strand, within GFF7154at 19.926 kb on + strand, within GFF7154at 19.927 kb on - strand, within GFF7154at 19.927 kb on - strand, within GFF7154at 20.025 kb on + strandat 20.026 kb on - strandat 20.026 kb on - strandat 20.026 kb on - strandat 20.066 kb on + strandat 20.066 kb on + strandat 20.066 kb on + strandat 20.066 kb on + strandat 20.067 kb on - strandat 20.067 kb on - strandat 20.067 kb on - strandat 20.924 kb on + strand, within GFF7156at 20.924 kb on + strand, within GFF7156at 20.924 kb on + strand, within GFF7156at 20.924 kb on + strand, within GFF7156at 20.924 kb on + strand, within GFF7156at 20.925 kb on - strand, within GFF7156at 20.925 kb on - strand, within GFF7156at 20.925 kb on - strand, within GFF7156at 21.197 kb on + strand, within GFF7156at 21.197 kb on + strand, within GFF7156at 21.197 kb on + strand, within GFF7156at 21.197 kb on + strand, within GFF7156at 21.197 kb on + strand, within GFF7156at 21.197 kb on + strand, within GFF7156at 21.197 kb on + strand, within GFF7156at 21.197 kb on + strand, within GFF7156at 21.197 kb on + strand, within GFF7156at 21.197 kb on + strand, within GFF7156at 21.197 kb on + strand, within GFF7156at 21.197 kb on + strand, within GFF7156at 21.197 kb on + strand, within GFF7156at 21.197 kb on + strand, within GFF7156at 21.198 kb on - strand, within GFF7156at 21.198 kb on - strand, within GFF7156at 21.198 kb on - strand, within GFF7156at 21.198 kb on - strand, within GFF7156at 21.198 kb on - strand, within GFF7156at 21.198 kb on - strand, within GFF7156at 21.198 kb on - strand, within GFF7156at 21.198 kb on - strand, within GFF7156at 21.198 kb on - strand, within GFF7156at 21.198 kb on - strand, within GFF7156at 21.198 kb on - strand, within GFF7156at 21.198 kb on - strand, within GFF7156at 21.198 kb on - strand, within GFF7156at 21.198 kb on - strand, within GFF7156at 21.198 kb on - strand, within GFF7156at 21.198 kb on - strand, within GFF7156at 21.198 kb on - strand, within GFF7156at 21.198 kb on - strand, within GFF7156at 21.198 kb on - strand, within GFF7156at 21.203 kb on + strand, within GFF7156at 21.203 kb on + strand, within GFF7156at 21.203 kb on + strand, within GFF7156at 21.203 kb on + strand, within GFF7156at 21.203 kb on + strand, within GFF7156at 21.203 kb on + strand, within GFF7156at 21.203 kb on + strand, within GFF7156at 21.203 kb on + strand, within GFF7156at 21.203 kb on + strand, within GFF7156at 21.203 kb on + strand, within GFF7156at 21.203 kb on + strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.204 kb on - strand, within GFF7156at 21.284 kb on + strand, within GFF7156at 21.284 kb on + strand, within GFF7156at 21.284 kb on + strand, within GFF7156at 21.284 kb on + strand, within GFF7156at 21.284 kb on + strand, within GFF7156at 21.284 kb on + strand, within GFF7156at 21.284 kb on + strand, within GFF7156at 21.284 kb on + strand, within GFF7156at 21.284 kb on + strand, within GFF7156at 21.284 kb on + strand, within GFF7156at 21.284 kb on + strand, within GFF7156at 21.285 kb on - strand, within GFF7156at 21.285 kb on - strand, within GFF7156at 21.285 kb on - strand, within GFF7156at 21.285 kb on - strand, within GFF7156at 21.285 kb on - strand, within GFF7156at 21.285 kb on - strand, within GFF7156at 21.285 kb on - strand, within GFF7156at 21.285 kb on - strand, within GFF7156at 21.285 kb on - strand, within GFF7156at 21.285 kb on - strand, within GFF7156at 21.285 kb on - strand, within GFF7156at 21.285 kb on - strand, within GFF7156at 21.285 kb on - strand, within GFF7156at 21.285 kb on - strand, within GFF7156at 21.285 kb on - strand, within GFF7156at 21.335 kb on + strand, within GFF7156at 21.335 kb on + strand, within GFF7156at 21.335 kb on + strand, within GFF7156at 21.335 kb on + strand, within GFF7156at 21.335 kb on + strand, within GFF7156at 21.336 kb on - strand, within GFF7156at 21.336 kb on - strand, within GFF7156at 21.336 kb on - strand, within GFF7156at 21.336 kb on - strand, within GFF7156at 21.336 kb on - strand, within GFF7156at 21.336 kb on - strand, within GFF7156at 21.336 kb on - strand, within GFF7156at 21.336 kb on - strand, within GFF7156at 21.336 kb on - strand, within GFF7156at 21.336 kb on - strand, within GFF7156at 21.336 kb on - strand, within GFF7156at 21.336 kb on - strand, within GFF7156at 21.336 kb on - strand, within GFF7156at 21.350 kb on + strand, within GFF7156at 21.350 kb on + strand, within GFF7156at 21.350 kb on + strand, within GFF7156at 21.350 kb on + strand, within GFF7156at 21.351 kb on - strand, within GFF7156

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
remove
19,116 + GFF7154 0.25 -0.1
19,116 + GFF7154 0.25 -0.3
19,116 + GFF7154 0.25 -0.7
19,116 + GFF7154 0.25 -0.7
19,116 + GFF7154 0.25 -0.3
19,116 + GFF7154 0.25 -0.4
19,117 - GFF7154 0.25 -0.4
19,117 - GFF7154 0.25 -0.5
19,117 - GFF7154 0.25 -1.1
19,117 - GFF7154 0.25 +0.1
19,117 - GFF7154 0.25 -0.2
19,117 - GFF7154 0.25 +0.1
19,117 - GFF7154 0.25 -0.7
19,117 - GFF7154 0.25 +1.0
19,117 - GFF7154 0.25 -0.6
19,117 - GFF7154 0.25 -0.1
19,118 + GFF7154 0.25 -0.0
19,119 - GFF7154 0.25 +0.1
19,119 - GFF7154 0.25 +0.4
19,134 + GFF7154 0.27 -0.1
19,134 + GFF7154 0.27 +0.3
19,134 + GFF7154 0.27 -0.4
19,134 + GFF7154 0.27 +1.8
19,134 + GFF7154 0.27 -0.3
19,134 + GFF7154 0.27 +0.1
19,134 + GFF7154 0.27 -0.3
19,134 + GFF7154 0.27 -0.6
19,134 + GFF7154 0.27 +0.4
19,134 + GFF7154 0.27 -1.4
19,134 + GFF7154 0.27 +0.2
19,135 - GFF7154 0.27 -0.5
19,135 - GFF7154 0.27 -1.2
19,305 + GFF7154 0.39 -0.6
19,305 + GFF7154 0.39 -0.2
19,305 + GFF7154 0.39 -0.5
19,305 + GFF7154 0.39 +0.3
19,305 + GFF7154 0.39 +0.9
19,305 + GFF7154 0.39 -0.5
19,305 + GFF7154 0.39 -0.6
19,305 + GFF7154 0.39 -0.2
19,305 + GFF7154 0.39 -0.2
19,306 - GFF7154 0.40 +0.3
19,306 - GFF7154 0.40 +0.8
19,306 - GFF7154 0.40 -0.8
19,306 - GFF7154 0.40 +0.1
19,306 - GFF7154 0.40 -1.2
19,306 - GFF7154 0.40 +0.5
19,657 + GFF7154 0.66 +0.4
19,657 + GFF7154 0.66 +1.6
19,657 + GFF7154 0.66 -0.2
19,926 + GFF7154 0.86 -1.0
19,926 + GFF7154 0.86 -0.2
19,926 + GFF7154 0.86 +0.2
19,926 + GFF7154 0.86 +0.4
19,926 + GFF7154 0.86 -0.8
19,926 + GFF7154 0.86 -0.7
19,927 - GFF7154 0.86 -0.0
19,927 - GFF7154 0.86 +0.1
20,025 + +0.3
20,026 - -0.0
20,026 - +1.8
20,026 - -0.2
20,066 + -0.7
20,066 + +0.0
20,066 + -0.5
20,066 + -1.0
20,067 - -0.7
20,067 - -1.9
20,067 - -0.1
20,924 + GFF7156 0.23 -0.2
20,924 + GFF7156 0.23 +0.5
20,924 + GFF7156 0.23 -0.2
20,924 + GFF7156 0.23 +0.3
20,924 + GFF7156 0.23 +0.6
20,925 - GFF7156 0.23 -0.7
20,925 - GFF7156 0.23 +0.0
20,925 - GFF7156 0.23 -2.2
21,197 + GFF7156 0.51 -0.8
21,197 + GFF7156 0.51 +0.3
21,197 + GFF7156 0.51 -0.2
21,197 + GFF7156 0.51 +0.7
21,197 + GFF7156 0.51 +0.0
21,197 + GFF7156 0.51 +0.5
21,197 + GFF7156 0.51 +0.7
21,197 + GFF7156 0.51 -0.3
21,197 + GFF7156 0.51 -0.7
21,197 + GFF7156 0.51 -0.3
21,197 + GFF7156 0.51 -0.2
21,197 + GFF7156 0.51 +1.4
21,197 + GFF7156 0.51 -0.7
21,197 + GFF7156 0.51 -0.3
21,198 - GFF7156 0.51 +0.7
21,198 - GFF7156 0.51 +0.5
21,198 - GFF7156 0.51 +0.3
21,198 - GFF7156 0.51 -0.2
21,198 - GFF7156 0.51 +0.4
21,198 - GFF7156 0.51 +0.6
21,198 - GFF7156 0.51 +1.2
21,198 - GFF7156 0.51 +0.3
21,198 - GFF7156 0.51 -0.2
21,198 - GFF7156 0.51 -0.4
21,198 - GFF7156 0.51 +1.0
21,198 - GFF7156 0.51 +0.1
21,198 - GFF7156 0.51 -0.7
21,198 - GFF7156 0.51 +1.5
21,198 - GFF7156 0.51 -1.7
21,198 - GFF7156 0.51 -0.2
21,198 - GFF7156 0.51 -0.3
21,198 - GFF7156 0.51 +0.7
21,198 - GFF7156 0.51 -0.1
21,203 + GFF7156 0.51 -2.2
21,203 + GFF7156 0.51 -0.7
21,203 + GFF7156 0.51 -0.7
21,203 + GFF7156 0.51 -0.5
21,203 + GFF7156 0.51 +0.1
21,203 + GFF7156 0.51 +0.3
21,203 + GFF7156 0.51 +0.3
21,203 + GFF7156 0.51 +0.8
21,203 + GFF7156 0.51 +0.0
21,203 + GFF7156 0.51 -0.0
21,203 + GFF7156 0.51 -0.5
21,204 - GFF7156 0.51 +0.2
21,204 - GFF7156 0.51 +0.5
21,204 - GFF7156 0.51 +0.6
21,204 - GFF7156 0.51 -0.1
21,204 - GFF7156 0.51 +0.8
21,204 - GFF7156 0.51 -2.0
21,204 - GFF7156 0.51 +0.8
21,204 - GFF7156 0.51 -0.3
21,204 - GFF7156 0.51 +0.4
21,204 - GFF7156 0.51 -0.6
21,204 - GFF7156 0.51 -0.4
21,204 - GFF7156 0.51 -0.1
21,204 - GFF7156 0.51 +0.1
21,204 - GFF7156 0.51 +0.1
21,204 - GFF7156 0.51 +0.3
21,204 - GFF7156 0.51 -0.4
21,204 - GFF7156 0.51 +0.4
21,204 - GFF7156 0.51 +0.1
21,204 - GFF7156 0.51 +0.1
21,204 - GFF7156 0.51 +0.9
21,204 - GFF7156 0.51 +0.4
21,284 + GFF7156 0.59 +1.0
21,284 + GFF7156 0.59 +0.2
21,284 + GFF7156 0.59 +0.1
21,284 + GFF7156 0.59 +0.2
21,284 + GFF7156 0.59 +0.4
21,284 + GFF7156 0.59 -0.1
21,284 + GFF7156 0.59 -0.5
21,284 + GFF7156 0.59 -0.5
21,284 + GFF7156 0.59 +0.6
21,284 + GFF7156 0.59 +0.3
21,284 + GFF7156 0.59 -0.1
21,285 - GFF7156 0.59 +0.0
21,285 - GFF7156 0.59 +1.0
21,285 - GFF7156 0.59 +0.4
21,285 - GFF7156 0.59 +0.9
21,285 - GFF7156 0.59 +0.8
21,285 - GFF7156 0.59 +1.3
21,285 - GFF7156 0.59 -0.2
21,285 - GFF7156 0.59 -0.7
21,285 - GFF7156 0.59 +0.2
21,285 - GFF7156 0.59 -0.6
21,285 - GFF7156 0.59 -0.2
21,285 - GFF7156 0.59 -0.2
21,285 - GFF7156 0.59 -0.5
21,285 - GFF7156 0.59 -1.4
21,285 - GFF7156 0.59 +0.6
21,335 + GFF7156 0.64 +0.7
21,335 + GFF7156 0.64 +0.5
21,335 + GFF7156 0.64 -0.1
21,335 + GFF7156 0.64 -0.1
21,335 + GFF7156 0.64 -0.4
21,336 - GFF7156 0.64 -0.3
21,336 - GFF7156 0.64 -0.4
21,336 - GFF7156 0.64 -0.2
21,336 - GFF7156 0.64 -0.6
21,336 - GFF7156 0.64 -1.9
21,336 - GFF7156 0.64 +0.0
21,336 - GFF7156 0.64 -0.1
21,336 - GFF7156 0.64 -1.5
21,336 - GFF7156 0.64 -0.5
21,336 - GFF7156 0.64 -0.3
21,336 - GFF7156 0.64 -0.2
21,336 - GFF7156 0.64 -0.2
21,336 - GFF7156 0.64 +0.4
21,350 + GFF7156 0.66 +0.2
21,350 + GFF7156 0.66 -0.3
21,350 + GFF7156 0.66 -0.6
21,350 + GFF7156 0.66 +1.1
21,351 - GFF7156 0.66 +0.8

Or see this region's nucleotide sequence