Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7005 and GFF7006 overlap by 1 nucleotides GFF7006 and GFF7007 are separated by 101 nucleotides GFF7007 and GFF7008 are separated by 114 nucleotides GFF7008 and GFF7009 are separated by 401 nucleotides
GFF7005 - Flagellar biosynthesis protein FlhB, at 21,691 to 22,785
GFF7005
GFF7006 - Flagellar biosynthesis protein FliR, at 22,785 to 23,501
GFF7006
GFF7007 - Flagellar biosynthesis protein FliQ, at 23,603 to 23,869
GFF7007
GFF7008 - no description, at 23,984 to 24,133
GFF7008
GFF7009 - hypothetical protein, at 24,535 to 24,930
GFF7009
Position (kb) 23
24 Strain fitness (log2 ratio) -2
-1
0
1 at 22.849 kb on + strand at 23.126 kb on - strand, within GFF7006 at 23.126 kb on - strand, within GFF7006 at 23.126 kb on - strand, within GFF7006 at 23.188 kb on + strand, within GFF7006 at 23.188 kb on + strand, within GFF7006 at 23.189 kb on - strand, within GFF7006 at 23.204 kb on + strand, within GFF7006 at 23.205 kb on - strand, within GFF7006 at 23.205 kb on - strand, within GFF7006 at 23.316 kb on + strand, within GFF7006 at 23.316 kb on + strand, within GFF7006 at 23.317 kb on - strand, within GFF7006 at 23.317 kb on - strand, within GFF7006 at 23.482 kb on + strand at 23.483 kb on - strand at 23.541 kb on + strand at 23.541 kb on + strand at 23.542 kb on - strand at 23.542 kb on - strand at 23.542 kb on - strand at 23.542 kb on - strand at 23.870 kb on + strand at 23.871 kb on - strand at 23.909 kb on + strand at 23.940 kb on + strand at 23.941 kb on - strand at 23.941 kb on - strand at 24.048 kb on + strand, within GFF7008 at 24.073 kb on - strand, within GFF7008 at 24.169 kb on + strand at 24.182 kb on - strand at 24.251 kb on - strand at 24.265 kb on + strand at 24.265 kb on + strand at 24.265 kb on + strand at 24.266 kb on - strand at 24.266 kb on - strand at 24.350 kb on + strand at 24.351 kb on - strand at 24.383 kb on + strand at 24.383 kb on + strand at 24.383 kb on + strand at 24.383 kb on + strand at 24.383 kb on + strand at 24.384 kb on - strand at 24.384 kb on - strand at 24.625 kb on + strand, within GFF7009 at 24.626 kb on - strand, within GFF7009 at 24.626 kb on - strand, within GFF7009 at 24.703 kb on + strand, within GFF7009 at 24.703 kb on + strand, within GFF7009 at 24.704 kb on - strand, within GFF7009 at 24.704 kb on - strand, within GFF7009 at 24.709 kb on + strand, within GFF7009 at 24.709 kb on + strand, within GFF7009 at 24.710 kb on - strand, within GFF7009 at 24.710 kb on - strand, within GFF7009 at 24.710 kb on - strand, within GFF7009 at 24.710 kb on - strand, within GFF7009 at 24.710 kb on - strand, within GFF7009 at 24.764 kb on + strand, within GFF7009 at 24.765 kb on - strand, within GFF7009
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 22,849 + -0.6 23,126 - GFF7006 0.48 -0.3 23,126 - GFF7006 0.48 -0.1 23,126 - GFF7006 0.48 -0.1 23,188 + GFF7006 0.56 -0.3 23,188 + GFF7006 0.56 -0.6 23,189 - GFF7006 0.56 -0.6 23,204 + GFF7006 0.58 -1.0 23,205 - GFF7006 0.59 -1.4 23,205 - GFF7006 0.59 +0.3 23,316 + GFF7006 0.74 +0.4 23,316 + GFF7006 0.74 +1.6 23,317 - GFF7006 0.74 -0.9 23,317 - GFF7006 0.74 -1.7 23,482 + -1.7 23,483 - -1.6 23,541 + +0.0 23,541 + -2.0 23,542 - -0.7 23,542 - -1.0 23,542 - -0.3 23,542 - -0.1 23,870 + -0.8 23,871 - +0.2 23,909 + +0.6 23,940 + -0.1 23,941 - +0.6 23,941 - +0.8 24,048 + GFF7008 0.43 +0.3 24,073 - GFF7008 0.59 -0.7 24,169 + +0.1 24,182 - +0.3 24,251 - -0.2 24,265 + -1.2 24,265 + +0.4 24,265 + +0.3 24,266 - -0.2 24,266 - -1.1 24,350 + -0.4 24,351 - -0.3 24,383 + +1.6 24,383 + +0.6 24,383 + -1.2 24,383 + -0.0 24,383 + -0.9 24,384 - -0.4 24,384 - +0.1 24,625 + GFF7009 0.23 -1.5 24,626 - GFF7009 0.23 +0.3 24,626 - GFF7009 0.23 -0.5 24,703 + GFF7009 0.42 -0.7 24,703 + GFF7009 0.42 -0.5 24,704 - GFF7009 0.43 -1.5 24,704 - GFF7009 0.43 +1.0 24,709 + GFF7009 0.44 +0.7 24,709 + GFF7009 0.44 +0.5 24,710 - GFF7009 0.44 -0.3 24,710 - GFF7009 0.44 +0.5 24,710 - GFF7009 0.44 -0.7 24,710 - GFF7009 0.44 -0.3 24,710 - GFF7009 0.44 +0.1 24,764 + GFF7009 0.58 -1.3 24,765 - GFF7009 0.58 -0.3
Or see this region's nucleotide sequence