Strain Fitness in Variovorax sp. SCN45 around GFF6994

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6992 and GFF6993 are separated by 1 nucleotidesGFF6993 and GFF6994 overlap by 4 nucleotidesGFF6994 and GFF6995 overlap by 4 nucleotides GFF6992 - Flagellum-specific ATP synthase FliI, at 9,538 to 10,929 GFF6992 GFF6993 - no description, at 10,931 to 11,773 GFF6993 GFF6994 - hypothetical protein, at 11,770 to 12,390 GFF6994 GFF6995 - Flagellar M-ring protein FliF, at 12,387 to 13,901 GFF6995 Position (kb) 11 12 13Strain fitness (log2 ratio) -1 0 1at 11.788 kb on - strandat 11.788 kb on - strandat 13.204 kb on + strand, within GFF6995

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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11,788 - -0.4
11,788 - -0.1
13,204 + GFF6995 0.54 -0.4

Or see this region's nucleotide sequence