Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6941 and GFF6942 are separated by 6 nucleotides GFF6942 and GFF6943 overlap by 4 nucleotides GFF6943 and GFF6944 are separated by 189 nucleotides
GFF6941 - Two-component transcriptional response regulator, LuxR family, at 16,380 to 17,249
GFF6941
GFF6942 - Universal stress protein UspA and related nucleotide-binding proteins, at 17,256 to 18,113
GFF6942
GFF6943 - no description, at 18,110 to 18,499
GFF6943
GFF6944 - Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) @ Fructose-6-phosphate phosphoketolase (EC 4.1.2.22), at 18,689 to 21,061
GFF6944
Position (kb) 18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.201 kb on + strand at 17.202 kb on - strand at 17.248 kb on - strand at 17.248 kb on - strand at 18.610 kb on - strand at 18.764 kb on + strand at 18.764 kb on + strand at 18.765 kb on - strand at 18.765 kb on - strand at 18.765 kb on - strand at 18.785 kb on + strand at 18.785 kb on + strand at 18.887 kb on + strand at 18.887 kb on + strand at 18.887 kb on + strand at 18.888 kb on - strand at 18.888 kb on - strand at 18.888 kb on - strand at 18.888 kb on - strand at 18.888 kb on - strand at 18.998 kb on + strand, within GFF6944 at 18.998 kb on + strand, within GFF6944 at 18.999 kb on - strand, within GFF6944 at 18.999 kb on - strand, within GFF6944 at 19.020 kb on + strand, within GFF6944 at 19.021 kb on - strand, within GFF6944 at 19.021 kb on - strand, within GFF6944 at 19.021 kb on - strand, within GFF6944 at 19.140 kb on - strand, within GFF6944 at 19.397 kb on + strand, within GFF6944 at 19.398 kb on - strand, within GFF6944
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 17,201 + +0.4 17,202 - -0.7 17,248 - +0.6 17,248 - -0.5 18,610 - -0.1 18,764 + -0.4 18,764 + -0.3 18,765 - +0.7 18,765 - +0.9 18,765 - -0.4 18,785 + -0.8 18,785 + +1.0 18,887 + -1.8 18,887 + +0.0 18,887 + +0.6 18,888 - -0.2 18,888 - -0.0 18,888 - -0.7 18,888 - -1.2 18,888 - +0.6 18,998 + GFF6944 0.13 -0.6 18,998 + GFF6944 0.13 -0.5 18,999 - GFF6944 0.13 +0.8 18,999 - GFF6944 0.13 +0.7 19,020 + GFF6944 0.14 +0.4 19,021 - GFF6944 0.14 -0.4 19,021 - GFF6944 0.14 -0.2 19,021 - GFF6944 0.14 +2.0 19,140 - GFF6944 0.19 -0.9 19,397 + GFF6944 0.30 +1.6 19,398 - GFF6944 0.30 -0.4
Or see this region's nucleotide sequence