Strain Fitness in Variovorax sp. SCN45 around GFF6920

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6920 and GFF6921 are separated by 32 nucleotidesGFF6921 and GFF6922 are separated by 76 nucleotides GFF6920 - no description, at 1 to 81 GFF6920 GFF6921 - no description, at 114 to 539 GFF6921 GFF6922 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 616 to 1,542 GFF6922 Position (kb) 0 1Strain fitness (log2 ratio) -1 0 1 2at 0.058 kb on + strand, within GFF6920at 0.324 kb on + strand, within GFF6921at 0.324 kb on + strand, within GFF6921at 0.325 kb on - strand, within GFF6921at 0.325 kb on - strand, within GFF6921at 0.325 kb on - strand, within GFF6921at 0.325 kb on - strand, within GFF6921at 0.325 kb on - strand, within GFF6921at 0.396 kb on + strand, within GFF6921at 0.396 kb on + strand, within GFF6921at 0.628 kb on + strandat 0.740 kb on - strand, within GFF6922

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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58 + GFF6920 0.70 -0.2
324 + GFF6921 0.49 +0.3
324 + GFF6921 0.49 -0.7
325 - GFF6921 0.50 -0.1
325 - GFF6921 0.50 +0.2
325 - GFF6921 0.50 -0.3
325 - GFF6921 0.50 +0.8
325 - GFF6921 0.50 -0.4
396 + GFF6921 0.66 +0.0
396 + GFF6921 0.66 -1.6
628 + +2.3
740 - GFF6922 0.13 +0.3

Or see this region's nucleotide sequence