Strain Fitness in Variovorax sp. SCN45 around GFF6897

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
28,455	+				+0.7
28,455	+				-0.7
28,455	+				-0.8
28,455	+				+0.2
28,456	-				+0.7
28,456	-				-0.2
28,456	-				-0.3
28,456	-				+0.6
28,456	-				+0.7
28,557	+		GFF6896	0.18	-0.2
28,558	+		GFF6896	0.18	+0.1
28,558	-		GFF6896	0.18	-0.0
28,860	+		GFF6896	0.49	-1.7
28,860	+		GFF6896	0.49	+0.1
28,860	+		GFF6896	0.49	+0.1
28,860	+		GFF6896	0.49	-0.2
28,860	+		GFF6896	0.49	+1.7
28,861	-		GFF6896	0.49	-0.9
28,861	-		GFF6896	0.49	-1.5
28,861	-		GFF6896	0.49	-0.5
28,861	-		GFF6896	0.49	+0.4
28,861	-		GFF6896	0.49	-1.3
28,861	-		GFF6896	0.49	-0.6
29,369	+				-0.2
29,370	-				-0.2
29,370	-				-0.4
29,370	-				-0.2
29,370	-				+0.1
30,209	+				-1.5
30,209	+				+0.7
30,209	+				-0.2
30,209	+				+0.7
30,210	-				-0.8
30,210	-				-0.5
30,210	-				-0.2
30,285	+				-0.7
30,286	-				-1.0
30,286	-				-0.5
30,286	-				-0.4
30,295	+				+0.7
30,295	+				-0.3
30,295	+				+0.1
30,296	-				-0.9
30,296	-				+1.4
30,296	-				+0.8
30,296	-				-0.3
30,296	-				+0.1
30,296	-				+0.4
30,296	-				-1.4
30,296	-				-0.9
30,298	-				+0.1
30,298	-				-1.2
30,315	+				-2.2
30,315	+				+0.3
30,315	+				+1.4
30,315	+				-1.1
30,315	+				+0.5
30,316	-				-0.8
30,316	-				-1.3
30,338	-				-0.7
30,339	+				-0.8
30,339	+				-1.5
30,339	+				-0.6
30,339	+				+0.7
30,340	-				-0.2
30,340	-				-0.3
30,340	-				-0.7
30,340	-				-0.3
30,340	-				-0.3
30,340	-				-0.8
30,340	-				+3.3
30,340	-				+0.7
30,343	+				-0.2
30,343	+				-0.9
30,343	+				-0.2
30,344	-				-0.8
30,344	-				+0.0
30,344	-				-1.6
30,369	+				-0.5
30,369	+				+0.1
30,369	+				-0.3
30,371	+				+0.2
30,371	+				-0.6
30,371	+				+0.0
30,372	-				-0.2
30,372	-				-1.1
30,446	+				-1.3
30,446	+				-2.4
30,663	+				-0.2
30,663	+				+0.2
30,663	+				+0.5
30,663	+				+1.3
30,663	+				+0.4
30,663	+				-0.0
30,663	+				+0.1
30,663	+				+0.3
30,663	+				+0.7
30,663	+				-1.9
30,664	-				-0.9
30,664	-				-0.2
30,664	-				-0.0
30,664	-				+0.5
30,809	+		GFF6898	0.13	-0.2
30,885	+		GFF6898	0.16	+0.5
30,885	+		GFF6898	0.16	+1.1
30,885	+		GFF6898	0.16	+0.1
30,885	+		GFF6898	0.16	-0.0
30,886	-		GFF6898	0.16	+0.0
30,886	-		GFF6898	0.16	-0.2
31,053	+		GFF6898	0.22	-0.0
31,053	+		GFF6898	0.22	+0.1
31,053	+		GFF6898	0.22	-0.9
31,054	-		GFF6898	0.23	-1.3
31,054	-		GFF6898	0.23	+1.4
31,054	-		GFF6898	0.23	-0.6
31,054	-		GFF6898	0.23	-0.0
31,054	-		GFF6898	0.23	-0.5
31,054	-		GFF6898	0.23	+1.6
31,054	-		GFF6898	0.23	-1.5
31,167	+		GFF6898	0.27	+0.6
31,168	-		GFF6898	0.27	+0.6