Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6890 and GFF6891 are separated by 10 nucleotides GFF6891 and GFF6892 are separated by 50 nucleotides GFF6892 and GFF6893 overlap by 4 nucleotides GFF6893 and GFF6894 are separated by 15 nucleotides
GFF6890 - Threonine efflux protein, at 23,909 to 24,547
GFF6890
GFF6891 - Phenazine biosynthesis protein PhzF like, at 24,558 to 25,394
GFF6891
GFF6892 - Uncharacterized glutathione S-transferase-like protein, at 25,445 to 26,086
GFF6892
GFF6893 - Phenazine biosynthesis protein PhzF like, at 26,083 to 27,015
GFF6893
GFF6894 - FIG00454405: hypothetical protein, at 27,031 to 27,723
GFF6894
Position (kb) 25
26
27 Strain fitness (log2 ratio) -1
0
1
2
3 at 24.735 kb on + strand, within GFF6891 at 24.735 kb on + strand, within GFF6891 at 24.735 kb on + strand, within GFF6891 at 24.736 kb on - strand, within GFF6891 at 25.077 kb on + strand, within GFF6891 at 25.077 kb on + strand, within GFF6891 at 25.078 kb on - strand, within GFF6891 at 25.197 kb on + strand, within GFF6891 at 25.197 kb on + strand, within GFF6891 at 25.255 kb on + strand, within GFF6891 at 25.574 kb on + strand, within GFF6892 at 25.574 kb on + strand, within GFF6892 at 25.575 kb on - strand, within GFF6892 at 25.670 kb on + strand, within GFF6892 at 25.670 kb on + strand, within GFF6892 at 25.670 kb on + strand, within GFF6892 at 25.704 kb on - strand, within GFF6892 at 25.704 kb on - strand, within GFF6892 at 25.803 kb on + strand, within GFF6892 at 25.804 kb on - strand, within GFF6892 at 25.804 kb on - strand, within GFF6892 at 25.907 kb on + strand, within GFF6892 at 25.908 kb on - strand, within GFF6892 at 25.908 kb on - strand, within GFF6892 at 25.908 kb on - strand, within GFF6892 at 25.908 kb on - strand, within GFF6892 at 25.991 kb on + strand, within GFF6892 at 26.027 kb on + strand at 26.027 kb on + strand at 26.140 kb on + strand at 26.752 kb on + strand, within GFF6893 at 26.752 kb on + strand, within GFF6893 at 26.753 kb on - strand, within GFF6893 at 26.753 kb on - strand, within GFF6893 at 26.753 kb on - strand, within GFF6893 at 26.890 kb on + strand, within GFF6893 at 26.891 kb on - strand, within GFF6893 at 26.891 kb on - strand, within GFF6893 at 26.935 kb on + strand at 26.935 kb on + strand at 26.935 kb on + strand at 26.935 kb on + strand at 26.936 kb on - strand at 26.936 kb on - strand at 26.936 kb on - strand at 26.936 kb on - strand at 26.936 kb on - strand at 26.936 kb on - strand at 26.936 kb on - strand at 26.936 kb on - strand at 26.936 kb on - strand at 27.013 kb on + strand at 27.013 kb on + strand at 27.013 kb on + strand at 27.013 kb on + strand at 27.013 kb on + strand at 27.013 kb on + strand at 27.014 kb on - strand at 27.014 kb on - strand at 27.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 24,735 + GFF6891 0.21 +0.7 24,735 + GFF6891 0.21 -0.5 24,735 + GFF6891 0.21 +0.1 24,736 - GFF6891 0.21 +0.0 25,077 + GFF6891 0.62 +0.1 25,077 + GFF6891 0.62 -0.2 25,078 - GFF6891 0.62 -0.0 25,197 + GFF6891 0.76 -0.8 25,197 + GFF6891 0.76 -0.5 25,255 + GFF6891 0.83 +0.4 25,574 + GFF6892 0.20 -0.1 25,574 + GFF6892 0.20 +0.5 25,575 - GFF6892 0.20 +0.1 25,670 + GFF6892 0.35 +0.3 25,670 + GFF6892 0.35 +0.7 25,670 + GFF6892 0.35 -0.7 25,704 - GFF6892 0.40 +0.5 25,704 - GFF6892 0.40 -0.3 25,803 + GFF6892 0.56 +0.3 25,804 - GFF6892 0.56 -0.5 25,804 - GFF6892 0.56 -0.6 25,907 + GFF6892 0.72 +1.1 25,908 - GFF6892 0.72 +1.1 25,908 - GFF6892 0.72 -0.1 25,908 - GFF6892 0.72 +0.4 25,908 - GFF6892 0.72 +0.7 25,991 + GFF6892 0.85 -0.5 26,027 + -0.2 26,027 + +0.6 26,140 + -0.9 26,752 + GFF6893 0.72 -0.4 26,752 + GFF6893 0.72 +0.1 26,753 - GFF6893 0.72 +0.7 26,753 - GFF6893 0.72 +3.0 26,753 - GFF6893 0.72 -1.0 26,890 + GFF6893 0.86 -0.1 26,891 - GFF6893 0.87 -0.9 26,891 - GFF6893 0.87 +0.2 26,935 + +0.9 26,935 + +0.4 26,935 + -0.1 26,935 + +0.7 26,936 - -0.7 26,936 - -0.3 26,936 - +0.0 26,936 - +0.5 26,936 - -0.2 26,936 - +0.1 26,936 - -0.6 26,936 - -0.3 26,936 - +0.5 27,013 + +0.3 27,013 + -1.1 27,013 + +0.7 27,013 + -0.7 27,013 + +0.2 27,013 + +1.5 27,014 - -0.6 27,014 - -0.4 27,014 - -0.2
Or see this region's nucleotide sequence