Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6880 and GFF6881 are separated by 20 nucleotides GFF6881 and GFF6882 overlap by 4 nucleotides GFF6882 and GFF6883 are separated by 476 nucleotides
GFF6880 - Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24), at 12,639 to 13,526
GFF6880
GFF6881 - dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133), at 13,547 to 14,437
GFF6881
GFF6882 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 14,434 to 15,504
GFF6882
GFF6883 - D-amino acid dehydrogenase (EC 1.4.99.6), at 15,981 to 17,282
GFF6883
Position (kb) 14
15
16 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 13.526 kb on + strand at 13.526 kb on + strand at 13.526 kb on + strand at 13.526 kb on + strand at 13.526 kb on + strand at 13.526 kb on + strand at 13.526 kb on + strand at 13.526 kb on + strand at 13.526 kb on + strand at 13.526 kb on + strand at 13.526 kb on + strand at 13.526 kb on + strand at 13.527 kb on - strand at 13.527 kb on - strand at 13.527 kb on - strand at 13.527 kb on - strand at 13.527 kb on - strand at 13.527 kb on - strand at 13.527 kb on - strand at 13.527 kb on - strand at 13.527 kb on - strand at 14.456 kb on + strand at 14.456 kb on + strand at 14.457 kb on - strand at 14.457 kb on - strand at 14.457 kb on - strand at 14.457 kb on - strand at 14.457 kb on - strand at 15.530 kb on + strand at 15.530 kb on + strand at 15.530 kb on + strand at 15.530 kb on + strand at 15.530 kb on + strand at 15.530 kb on + strand at 15.530 kb on + strand at 15.530 kb on + strand at 15.530 kb on + strand at 15.530 kb on + strand at 15.531 kb on - strand at 15.531 kb on - strand at 15.531 kb on - strand at 15.531 kb on - strand at 15.531 kb on - strand at 15.531 kb on - strand at 15.531 kb on - strand at 15.531 kb on - strand at 15.531 kb on - strand at 15.531 kb on - strand at 15.542 kb on + strand at 15.542 kb on + strand at 15.542 kb on + strand at 15.542 kb on + strand at 15.542 kb on + strand at 15.542 kb on + strand at 15.542 kb on + strand at 15.542 kb on + strand at 15.543 kb on - strand at 15.543 kb on - strand at 15.543 kb on - strand at 15.543 kb on - strand at 15.543 kb on - strand at 15.543 kb on - strand at 15.543 kb on - strand at 15.543 kb on - strand at 15.543 kb on - strand at 15.543 kb on - strand at 15.543 kb on - strand at 15.563 kb on - strand at 15.652 kb on + strand at 15.652 kb on + strand at 15.652 kb on + strand at 15.653 kb on - strand at 15.653 kb on - strand at 15.653 kb on - strand at 15.696 kb on - strand at 15.716 kb on + strand at 15.716 kb on + strand at 15.717 kb on - strand at 15.767 kb on + strand at 15.767 kb on + strand at 15.767 kb on + strand at 15.767 kb on + strand at 15.767 kb on + strand at 15.767 kb on + strand at 15.767 kb on + strand at 15.767 kb on + strand at 15.768 kb on - strand at 15.768 kb on - strand at 15.768 kb on - strand at 15.768 kb on - strand at 15.768 kb on - strand at 15.768 kb on - strand at 15.768 kb on - strand at 15.867 kb on - strand at 15.918 kb on + strand at 15.919 kb on - strand at 15.921 kb on + strand at 15.921 kb on + strand at 15.922 kb on - strand at 15.922 kb on - strand at 15.922 kb on - strand at 15.922 kb on - strand at 15.929 kb on + strand at 15.929 kb on + strand at 15.929 kb on + strand at 15.930 kb on - strand at 15.930 kb on - strand at 15.930 kb on - strand at 15.932 kb on + strand at 15.932 kb on + strand at 15.932 kb on + strand at 15.932 kb on + strand at 15.932 kb on + strand at 15.932 kb on + strand at 15.932 kb on + strand at 15.932 kb on + strand at 15.932 kb on + strand at 15.932 kb on + strand at 15.932 kb on + strand at 15.932 kb on + strand at 15.932 kb on + strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.973 kb on + strand at 15.973 kb on + strand at 15.973 kb on + strand at 15.973 kb on + strand at 15.973 kb on + strand at 15.973 kb on + strand at 15.974 kb on - strand at 15.974 kb on - strand at 15.974 kb on - strand at 15.974 kb on - strand at 15.974 kb on - strand at 15.974 kb on - strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.029 kb on + strand at 16.030 kb on - strand at 16.030 kb on - strand at 16.030 kb on - strand at 16.030 kb on - strand at 16.030 kb on - strand at 16.030 kb on - strand at 16.030 kb on - strand at 16.030 kb on - strand at 16.030 kb on - strand at 16.030 kb on - strand at 16.032 kb on + strand at 16.032 kb on + strand at 16.032 kb on + strand at 16.032 kb on + strand at 16.032 kb on + strand at 16.032 kb on + strand at 16.032 kb on + strand at 16.032 kb on + strand at 16.032 kb on + strand at 16.032 kb on + strand at 16.032 kb on + strand at 16.032 kb on + strand at 16.032 kb on + strand at 16.032 kb on + strand at 16.032 kb on + strand at 16.032 kb on + strand at 16.032 kb on + strand at 16.032 kb on + strand at 16.032 kb on + strand at 16.032 kb on + strand at 16.033 kb on - strand at 16.033 kb on - strand at 16.033 kb on - strand at 16.033 kb on - strand at 16.033 kb on - strand at 16.033 kb on - strand at 16.033 kb on - strand at 16.033 kb on - strand at 16.033 kb on - strand at 16.033 kb on - strand at 16.033 kb on - strand at 16.033 kb on - strand at 16.033 kb on - strand at 16.033 kb on - strand at 16.033 kb on - strand at 16.033 kb on - strand at 16.033 kb on - strand at 16.033 kb on - strand at 16.033 kb on - strand at 16.033 kb on - strand at 16.033 kb on - strand at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.320 kb on + strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.321 kb on - strand, within GFF6883 at 16.322 kb on + strand, within GFF6883 at 16.322 kb on + strand, within GFF6883 at 16.322 kb on + strand, within GFF6883 at 16.322 kb on + strand, within GFF6883 at 16.322 kb on + strand, within GFF6883 at 16.322 kb on + strand, within GFF6883 at 16.322 kb on + strand, within GFF6883 at 16.322 kb on + strand, within GFF6883 at 16.322 kb on + strand, within GFF6883 at 16.323 kb on - strand, within GFF6883 at 16.323 kb on - strand, within GFF6883 at 16.323 kb on - strand, within GFF6883 at 16.323 kb on - strand, within GFF6883 at 16.323 kb on - strand, within GFF6883 at 16.323 kb on - strand, within GFF6883 at 16.368 kb on + strand, within GFF6883 at 16.368 kb on + strand, within GFF6883 at 16.368 kb on + strand, within GFF6883 at 16.368 kb on + strand, within GFF6883 at 16.369 kb on - strand, within GFF6883 at 16.369 kb on - strand, within GFF6883 at 16.369 kb on - strand, within GFF6883 at 16.369 kb on - strand, within GFF6883 at 16.401 kb on + strand, within GFF6883 at 16.401 kb on + strand, within GFF6883 at 16.401 kb on + strand, within GFF6883 at 16.401 kb on + strand, within GFF6883 at 16.401 kb on + strand, within GFF6883 at 16.401 kb on + strand, within GFF6883 at 16.402 kb on - strand, within GFF6883 at 16.402 kb on - strand, within GFF6883 at 16.402 kb on - strand, within GFF6883 at 16.402 kb on - strand, within GFF6883 at 16.402 kb on - strand, within GFF6883
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 13,526 + -0.8 13,526 + +0.4 13,526 + -0.3 13,526 + +0.2 13,526 + -0.8 13,526 + +0.5 13,526 + +0.3 13,526 + +0.4 13,526 + +1.1 13,526 + +1.0 13,526 + +0.3 13,526 + -0.1 13,527 - -0.3 13,527 - +0.8 13,527 - +0.2 13,527 - -0.2 13,527 - -0.6 13,527 - -0.4 13,527 - +1.3 13,527 - -0.0 13,527 - +0.4 14,456 + -0.3 14,456 + +0.3 14,457 - -0.7 14,457 - -0.6 14,457 - -1.7 14,457 - -0.3 14,457 - +0.4 15,530 + +0.2 15,530 + +0.2 15,530 + +0.1 15,530 + -0.3 15,530 + +0.7 15,530 + +0.3 15,530 + +1.3 15,530 + +0.6 15,530 + -0.1 15,530 + -0.0 15,531 - +0.3 15,531 - -0.7 15,531 - +0.1 15,531 - -0.5 15,531 - -0.1 15,531 - -0.1 15,531 - -0.1 15,531 - -0.1 15,531 - -0.8 15,531 - +0.5 15,542 + -0.5 15,542 + -0.6 15,542 + -0.2 15,542 + +0.2 15,542 + +1.9 15,542 + +0.2 15,542 + +0.6 15,542 + +0.1 15,543 - +0.1 15,543 - -1.5 15,543 - -0.1 15,543 - -0.1 15,543 - -0.5 15,543 - -0.4 15,543 - +0.3 15,543 - -1.9 15,543 - -0.1 15,543 - +1.9 15,543 - -0.2 15,563 - -1.7 15,652 + -0.2 15,652 + -1.6 15,652 + -0.7 15,653 - -1.1 15,653 - +0.1 15,653 - +0.9 15,696 - -0.5 15,716 + +0.3 15,716 + -0.7 15,717 - +0.2 15,767 + -0.1 15,767 + +0.6 15,767 + +0.0 15,767 + +0.7 15,767 + +0.6 15,767 + +0.2 15,767 + -0.5 15,767 + +0.1 15,768 - +0.1 15,768 - -0.3 15,768 - -0.9 15,768 - +0.3 15,768 - -0.5 15,768 - +0.5 15,768 - -0.2 15,867 - +0.4 15,918 + -1.5 15,919 - +0.5 15,921 + -0.5 15,921 + +1.6 15,922 - -0.0 15,922 - -0.2 15,922 - +0.3 15,922 - -0.4 15,929 + -0.6 15,929 + +1.1 15,929 + -0.5 15,930 - -1.5 15,930 - +0.9 15,930 - -0.1 15,932 + -0.7 15,932 + +0.5 15,932 + -0.3 15,932 + +0.8 15,932 + -0.6 15,932 + +0.3 15,932 + -0.3 15,932 + +0.7 15,932 + +0.1 15,932 + -0.1 15,932 + -0.0 15,932 + -0.1 15,932 + +1.1 15,933 - -0.2 15,933 - -0.1 15,933 - -2.4 15,933 - -0.1 15,933 - -1.2 15,933 - +2.5 15,933 - -0.7 15,933 - +0.2 15,933 - +0.3 15,933 - +0.0 15,933 - -0.6 15,933 - -1.5 15,933 - -0.4 15,933 - -0.3 15,933 - -0.3 15,973 + -0.3 15,973 + +1.7 15,973 + +0.0 15,973 + +0.2 15,973 + +0.2 15,973 + -0.9 15,974 - -0.1 15,974 - -0.7 15,974 - +0.3 15,974 - +0.2 15,974 - +0.2 15,974 - -1.9 16,029 + +0.2 16,029 + +0.0 16,029 + -1.0 16,029 + -0.8 16,029 + -1.4 16,029 + +0.1 16,029 + -0.2 16,029 + -0.4 16,029 + +0.1 16,029 + +0.7 16,029 + -0.4 16,029 + +0.1 16,029 + +1.4 16,029 + +0.1 16,029 + +0.1 16,029 + +0.5 16,029 + -0.2 16,029 + -0.9 16,029 + -0.9 16,029 + -0.6 16,029 + -1.9 16,029 + -0.2 16,029 + -0.3 16,029 + -2.5 16,030 - -1.6 16,030 - +0.1 16,030 - -0.3 16,030 - +0.3 16,030 - -1.7 16,030 - +1.2 16,030 - +0.0 16,030 - -0.3 16,030 - -0.3 16,030 - -0.2 16,032 + +0.6 16,032 + -0.5 16,032 + -0.2 16,032 + +0.7 16,032 + -0.4 16,032 + -0.6 16,032 + -0.0 16,032 + -0.5 16,032 + -0.5 16,032 + +0.2 16,032 + +0.7 16,032 + +0.2 16,032 + +0.1 16,032 + -0.1 16,032 + -0.2 16,032 + +0.8 16,032 + -0.3 16,032 + -0.3 16,032 + -0.9 16,032 + -0.7 16,033 - -0.0 16,033 - +0.2 16,033 - +0.1 16,033 - -0.6 16,033 - -0.6 16,033 - +0.6 16,033 - -0.7 16,033 - -0.5 16,033 - +0.0 16,033 - +0.3 16,033 - +1.5 16,033 - -0.2 16,033 - +0.1 16,033 - +1.7 16,033 - -0.3 16,033 - +0.5 16,033 - -0.3 16,033 - +0.2 16,033 - +0.3 16,033 - +0.0 16,033 - +1.1 16,320 + GFF6883 0.26 -0.1 16,320 + GFF6883 0.26 +0.3 16,320 + GFF6883 0.26 -0.0 16,320 + GFF6883 0.26 +1.2 16,320 + GFF6883 0.26 -1.3 16,320 + GFF6883 0.26 +0.6 16,320 + GFF6883 0.26 +0.7 16,320 + GFF6883 0.26 +0.1 16,320 + GFF6883 0.26 -0.1 16,320 + GFF6883 0.26 -0.3 16,320 + GFF6883 0.26 -1.2 16,320 + GFF6883 0.26 -0.1 16,320 + GFF6883 0.26 -0.4 16,320 + GFF6883 0.26 -0.3 16,320 + GFF6883 0.26 +0.0 16,320 + GFF6883 0.26 -1.4 16,320 + GFF6883 0.26 -0.4 16,320 + GFF6883 0.26 -0.6 16,320 + GFF6883 0.26 -0.4 16,320 + GFF6883 0.26 +0.6 16,320 + GFF6883 0.26 +0.2 16,320 + GFF6883 0.26 +0.1 16,320 + GFF6883 0.26 -1.3 16,320 + GFF6883 0.26 -1.7 16,320 + GFF6883 0.26 -0.0 16,320 + GFF6883 0.26 -0.0 16,320 + GFF6883 0.26 -0.0 16,320 + GFF6883 0.26 -0.3 16,320 + GFF6883 0.26 +0.5 16,320 + GFF6883 0.26 -0.1 16,320 + GFF6883 0.26 -0.4 16,320 + GFF6883 0.26 -0.6 16,320 + GFF6883 0.26 -0.7 16,320 + GFF6883 0.26 +0.3 16,320 + GFF6883 0.26 -0.1 16,320 + GFF6883 0.26 -0.7 16,320 + GFF6883 0.26 -0.6 16,321 - GFF6883 0.26 +0.6 16,321 - GFF6883 0.26 -0.6 16,321 - GFF6883 0.26 +0.9 16,321 - GFF6883 0.26 -0.4 16,321 - GFF6883 0.26 +0.9 16,321 - GFF6883 0.26 -0.6 16,321 - GFF6883 0.26 -0.7 16,321 - GFF6883 0.26 +0.3 16,321 - GFF6883 0.26 -0.0 16,321 - GFF6883 0.26 -0.4 16,321 - GFF6883 0.26 -0.0 16,321 - GFF6883 0.26 -0.2 16,321 - GFF6883 0.26 -0.4 16,321 - GFF6883 0.26 -1.8 16,321 - GFF6883 0.26 +0.1 16,321 - GFF6883 0.26 +0.7 16,321 - GFF6883 0.26 +3.5 16,321 - GFF6883 0.26 -0.5 16,321 - GFF6883 0.26 -0.3 16,321 - GFF6883 0.26 +1.2 16,321 - GFF6883 0.26 +1.4 16,321 - GFF6883 0.26 -0.7 16,321 - GFF6883 0.26 +0.7 16,321 - GFF6883 0.26 +0.0 16,321 - GFF6883 0.26 +0.0 16,321 - GFF6883 0.26 +0.0 16,321 - GFF6883 0.26 +0.6 16,321 - GFF6883 0.26 -0.0 16,321 - GFF6883 0.26 +1.0 16,321 - GFF6883 0.26 -0.3 16,321 - GFF6883 0.26 -1.0 16,321 - GFF6883 0.26 -1.0 16,321 - GFF6883 0.26 -0.7 16,321 - GFF6883 0.26 +0.0 16,321 - GFF6883 0.26 -0.1 16,321 - GFF6883 0.26 +0.4 16,321 - GFF6883 0.26 -0.5 16,321 - GFF6883 0.26 +3.3 16,321 - GFF6883 0.26 +0.4 16,321 - GFF6883 0.26 +0.9 16,321 - GFF6883 0.26 -1.0 16,321 - GFF6883 0.26 -0.3 16,321 - GFF6883 0.26 +1.3 16,322 + GFF6883 0.26 -0.3 16,322 + GFF6883 0.26 -0.6 16,322 + GFF6883 0.26 -0.3 16,322 + GFF6883 0.26 +0.5 16,322 + GFF6883 0.26 +0.0 16,322 + GFF6883 0.26 -0.4 16,322 + GFF6883 0.26 -0.1 16,322 + GFF6883 0.26 -0.2 16,322 + GFF6883 0.26 -1.0 16,323 - GFF6883 0.26 +0.3 16,323 - GFF6883 0.26 -0.2 16,323 - GFF6883 0.26 -0.2 16,323 - GFF6883 0.26 -0.0 16,323 - GFF6883 0.26 +1.7 16,323 - GFF6883 0.26 +0.4 16,368 + GFF6883 0.30 -1.7 16,368 + GFF6883 0.30 -0.3 16,368 + GFF6883 0.30 +1.0 16,368 + GFF6883 0.30 -0.3 16,369 - GFF6883 0.30 -0.3 16,369 - GFF6883 0.30 -1.0 16,369 - GFF6883 0.30 -0.4 16,369 - GFF6883 0.30 +0.4 16,401 + GFF6883 0.32 -0.1 16,401 + GFF6883 0.32 +0.3 16,401 + GFF6883 0.32 -0.2 16,401 + GFF6883 0.32 -1.1 16,401 + GFF6883 0.32 -1.2 16,401 + GFF6883 0.32 -0.5 16,402 - GFF6883 0.32 -0.4 16,402 - GFF6883 0.32 -0.6 16,402 - GFF6883 0.32 +0.7 16,402 - GFF6883 0.32 -0.4 16,402 - GFF6883 0.32 +0.3
Or see this region's nucleotide sequence