Strain Fitness in Variovorax sp. SCN45 around GFF6879

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
11,217	+		GFF6878	0.56	-2.1
11,218	-		GFF6878	0.56	-0.3
11,218	-		GFF6878	0.56	-2.7
11,262	+		GFF6878	0.59	-2.1
11,262	+		GFF6878	0.59	-1.5
11,262	+		GFF6878	0.59	-2.1
11,262	+		GFF6878	0.59	-2.6
11,262	+		GFF6878	0.59	-3.6
11,262	+		GFF6878	0.59	-1.6
11,262	+		GFF6878	0.59	-1.3
11,262	+		GFF6878	0.59	-2.8
11,263	-		GFF6878	0.59	-3.1
11,263	-		GFF6878	0.59	-2.2
11,263	-		GFF6878	0.59	+0.7
11,263	-		GFF6878	0.59	-0.9
11,263	-		GFF6878	0.59	-0.9
11,263	-		GFF6878	0.59	-1.6
11,263	-		GFF6878	0.59	-1.3
11,263	-		GFF6878	0.59	-0.5
11,263	-		GFF6878	0.59	-0.3
11,263	-		GFF6878	0.59	-1.7
11,329	+		GFF6878	0.63	-3.1
11,330	-		GFF6878	0.63	-3.2
11,387	+		GFF6878	0.67	-3.1
11,387	+		GFF6878	0.67	-0.9
11,388	-		GFF6878	0.67	-2.8
11,439	+		GFF6878	0.70	-1.9
11,439	+		GFF6878	0.70	-1.3
11,440	-		GFF6878	0.70	-1.1
11,440	-		GFF6878	0.70	-1.7
11,560	-		GFF6878	0.77	-4.0
11,560	-		GFF6878	0.77	-2.3
11,571	+		GFF6878	0.78	-2.0
11,572	-		GFF6878	0.78	-1.8
11,621	+		GFF6878	0.81	-1.9
11,622	-		GFF6878	0.81	-0.6
11,622	-		GFF6878	0.81	-3.2
11,632	-		GFF6878	0.82	-3.2
11,685	+		GFF6878	0.85	-0.9
11,685	+		GFF6878	0.85	-1.5
11,685	+		GFF6878	0.85	-2.5
11,685	+		GFF6878	0.85	-0.6
11,685	+		GFF6878	0.85	-0.9
11,685	+		GFF6878	0.85	-0.6
11,685	+		GFF6878	0.85	-2.7
11,686	-		GFF6878	0.85	-4.2
11,686	-		GFF6878	0.85	-1.3
11,699	+		GFF6878	0.86	-1.3
11,742	+		GFF6878	0.88	-0.3
11,742	+		GFF6878	0.88	-2.5
11,742	+		GFF6878	0.88	-3.6
11,743	-		GFF6878	0.88	-1.6
11,743	-		GFF6878	0.88	-1.9
11,743	-		GFF6878	0.88	-1.1
11,743	-		GFF6878	0.88	-1.3
11,744	-		GFF6878	0.88	-0.6
11,793	+				-0.1
11,793	+				+0.7
11,794	-				-1.9
11,794	-				-2.5
11,874	+				-1.6
11,874	+				-2.0
11,874	+				-2.9
11,874	+				-2.4
11,874	+				-2.5
11,874	+				-1.7
11,874	+				-2.5
11,875	-				+0.4
11,875	-				-3.2
11,908	+				+0.9
11,908	+				-1.1
11,908	+				-1.1
11,908	+				-1.1
11,908	+				-0.9
11,908	+				-2.3
11,908	+				-0.6
11,908	+				-0.6
11,908	+				-1.6
11,908	+				-2.7
11,908	+				-0.6
11,908	+				-0.9
11,908	+				-0.3
11,909	-				-0.3
11,909	-				-1.1
11,909	-				-0.6
11,909	-				-0.3
11,909	-				-0.9
11,909	-				+0.7
11,909	-				-0.4
11,909	-				-1.2
12,095	+				+0.5
12,095	+				-0.2
12,095	+				+0.3
12,095	+				-0.4
12,095	+				-0.3
12,095	+				-0.3
12,095	+				-0.7
12,096	-				-0.7
12,096	-				+0.3
12,096	-				+0.1
12,096	-				-0.2
12,096	-				+0.7
12,096	-				-0.6
12,096	-				-0.1
12,096	-				+0.4
12,676	+				-2.0
12,676	+				-1.8
12,677	-				-1.3
12,677	-				-2.4
12,677	-				-4.1
12,677	-				+1.7
13,415	-		GFF6880	0.87	-0.3
13,526	+				-0.8
13,526	+				+0.4
13,526	+				-0.3
13,526	+				+0.2
13,526	+				-0.8
13,526	+				+0.5
13,526	+				+0.3
13,526	+				+0.4
13,526	+				+1.1
13,526	+				+1.0
13,526	+				+0.3
13,526	+				-0.1
13,527	-				-0.3
13,527	-				+0.8
13,527	-				+0.2
13,527	-				-0.2
13,527	-				-0.6
13,527	-				-0.4
13,527	-				+1.3
13,527	-				-0.0
13,527	-				+0.4