Strain Fitness in Variovorax sp. SCN45 around GFF6877

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
8,868	+		GFF6876	0.13	-2.3
8,868	+		GFF6876	0.13	-2.1
8,869	-		GFF6876	0.13	-0.6
8,869	-		GFF6876	0.13	-1.3
8,869	-		GFF6876	0.13	-2.5
8,869	-		GFF6876	0.13	-2.7
8,869	-		GFF6876	0.13	-0.6
8,869	-		GFF6876	0.13	-1.1
8,898	+		GFF6876	0.16	-3.7
8,899	-		GFF6876	0.16	-2.2
8,899	-		GFF6876	0.16	-0.6
8,973	+		GFF6876	0.22	-3.8
8,973	+		GFF6876	0.22	-3.8
8,973	+		GFF6876	0.22	-1.9
8,973	+		GFF6876	0.22	-2.9
8,973	+		GFF6876	0.22	-1.1
8,973	+		GFF6876	0.22	-2.7
8,974	-		GFF6876	0.23	-0.9
8,974	-		GFF6876	0.23	-2.8
8,974	-		GFF6876	0.23	-4.2
8,974	-		GFF6876	0.23	-3.6
8,982	+		GFF6876	0.23	-0.6
8,982	+		GFF6876	0.23	-1.9
8,982	+		GFF6876	0.23	-1.5
8,982	+		GFF6876	0.23	-0.1
8,982	+		GFF6876	0.23	-2.3
8,982	+		GFF6876	0.23	-3.3
8,982	+		GFF6876	0.23	-0.9
8,982	+		GFF6876	0.23	-3.3
8,983	-		GFF6876	0.23	-0.9
8,983	-		GFF6876	0.23	-2.0
8,983	-		GFF6876	0.23	-3.0
8,983	-		GFF6876	0.23	-0.9
8,983	-		GFF6876	0.23	-2.5
8,983	-		GFF6876	0.23	-1.5
8,983	-		GFF6876	0.23	-2.2
8,983	-		GFF6876	0.23	-4.3
8,983	-		GFF6876	0.23	-2.9
9,002	-		GFF6876	0.25	-2.0
9,002	-		GFF6876	0.25	+0.1
9,051	+		GFF6876	0.30	-1.3
9,051	+		GFF6876	0.30	+0.7
9,171	+		GFF6876	0.40	-3.0
9,171	+		GFF6876	0.40	-2.8
9,171	+		GFF6876	0.40	-1.1
9,171	+		GFF6876	0.40	-3.3
9,171	+		GFF6876	0.40	-1.3
9,171	+		GFF6876	0.40	-1.7
9,171	+		GFF6876	0.40	-2.4
9,171	+		GFF6876	0.40	-2.2
9,171	+		GFF6876	0.40	-3.4
9,171	+		GFF6876	0.40	+0.1
9,171	+		GFF6876	0.40	-0.3
9,171	+		GFF6876	0.40	-3.1
9,171	+		GFF6876	0.40	-2.2
9,171	+		GFF6876	0.40	-3.2
9,171	+		GFF6876	0.40	-1.1
9,171	+		GFF6876	0.40	-1.7
9,171	+		GFF6876	0.40	-2.7
9,171	+		GFF6876	0.40	-3.2
9,171	+		GFF6876	0.40	-2.5
9,171	+		GFF6876	0.40	-1.1
9,171	+		GFF6876	0.40	-2.0
9,171	+		GFF6876	0.40	-1.5
9,171	+		GFF6876	0.40	-0.6
9,171	+		GFF6876	0.40	-2.9
9,171	+		GFF6876	0.40	-1.9
9,172	-		GFF6876	0.41	-3.3
9,172	-		GFF6876	0.41	-1.5
9,172	-		GFF6876	0.41	-2.9
9,172	-		GFF6876	0.41	-1.9
9,172	-		GFF6876	0.41	-3.6
9,172	-		GFF6876	0.41	-0.9
9,172	-		GFF6876	0.41	-3.3
9,172	-		GFF6876	0.41	-0.6
9,172	-		GFF6876	0.41	-2.7
9,172	-		GFF6876	0.41	-3.5
9,172	-		GFF6876	0.41	-0.0
9,172	-		GFF6876	0.41	-1.6
9,172	-		GFF6876	0.41	-4.2
9,172	-		GFF6876	0.41	-3.3
9,172	-		GFF6876	0.41	-1.5
9,172	-		GFF6876	0.41	-0.9
9,172	-		GFF6876	0.41	-2.6
9,172	-		GFF6876	0.41	-2.5
9,189	+		GFF6876	0.42	-3.1
9,189	+		GFF6876	0.42	-1.3
9,189	+		GFF6876	0.42	-2.4
9,189	+		GFF6876	0.42	-3.0
9,189	+		GFF6876	0.42	-2.7
9,189	+		GFF6876	0.42	-2.0
9,189	+		GFF6876	0.42	-3.5
9,190	-		GFF6876	0.42	-3.5
9,190	-		GFF6876	0.42	-1.5
9,282	+		GFF6876	0.50	-0.1
9,429	+		GFF6876	0.64	-2.3
9,457	+		GFF6876	0.66	-1.3
9,457	+		GFF6876	0.66	-3.2
9,501	+		GFF6876	0.70	-2.5
9,501	+		GFF6876	0.70	-1.3
9,501	+		GFF6876	0.70	-3.8
9,501	+		GFF6876	0.70	+0.7
9,501	+		GFF6876	0.70	-1.9
9,501	+		GFF6876	0.70	-4.3
9,501	+		GFF6876	0.70	-1.9
9,501	+		GFF6876	0.70	-1.7
9,501	+		GFF6876	0.70	-1.7
9,501	+		GFF6876	0.70	-1.3
9,501	+		GFF6876	0.70	-0.9
9,501	+		GFF6876	0.70	-3.3
9,501	+		GFF6876	0.70	-3.6
9,501	+		GFF6876	0.70	-1.1
9,501	+		GFF6876	0.70	-1.3
9,502	-		GFF6876	0.70	-4.5
9,502	-		GFF6876	0.70	-1.6
9,502	-		GFF6876	0.70	-3.0
9,502	-		GFF6876	0.70	-2.4
9,502	-		GFF6876	0.70	-0.6
9,502	-		GFF6876	0.70	-0.6
9,502	-		GFF6876	0.70	-1.6
9,502	-		GFF6876	0.70	-2.1
9,502	-		GFF6876	0.70	-3.8
9,502	-		GFF6876	0.70	-1.6
9,502	-		GFF6876	0.70	-2.3
9,502	-		GFF6876	0.70	-3.0
9,502	-		GFF6876	0.70	-3.6
9,571	-		GFF6876	0.77	-1.6
9,687	+		GFF6876	0.87	-3.3
9,688	-		GFF6876	0.87	-1.7
10,051	-				-0.7
10,121	-				-3.4
10,121	-				-2.3
10,126	+				-0.9
10,126	+				-2.5
10,126	+				-1.3
10,127	-				-0.6
10,129	+				-0.3
10,129	+				-0.9
10,129	+				-1.1
10,256	+				-2.7
10,256	+				-3.8
10,332	+				-3.1
10,332	+				-1.5
10,332	+				-1.5
10,332	+				-2.8
10,333	-				-4.3
10,333	-				-2.9
10,335	+				-4.6
10,335	+				-1.3
10,336	-				-3.3
10,336	-				-1.1
10,336	-				-1.5
10,336	-				-2.7
10,346	+				-1.3
10,347	-				-2.6
10,347	-				-2.6
10,353	+				-1.7
10,354	-				-1.9
10,358	-				-1.9
10,437	+				-4.4
10,437	+				-1.3
10,437	+				+1.7
10,437	+				-1.6
10,437	+				-1.1
10,437	+				-1.5
10,437	+				-2.0
10,437	+				-0.9
10,437	+				-1.6
10,438	-				-4.1
10,438	-				-1.9
10,438	-				-3.1
10,438	-				-2.4
10,442	+				+0.7
10,504	+		GFF6878	0.13	-0.9
10,504	+		GFF6878	0.13	-3.5
10,504	+		GFF6878	0.13	-1.1
10,504	+		GFF6878	0.13	-2.1
10,504	+		GFF6878	0.13	-0.9
10,505	-		GFF6878	0.13	-2.8
10,505	-		GFF6878	0.13	-3.5
10,505	-		GFF6878	0.13	-2.7
10,505	-		GFF6878	0.13	-2.4
10,505	-		GFF6878	0.13	-4.9
10,535	+		GFF6878	0.15	-1.8
10,535	+		GFF6878	0.15	-1.5
10,536	-		GFF6878	0.15	-2.7
10,536	-		GFF6878	0.15	-1.4
10,536	-		GFF6878	0.15	-0.6
10,557	-		GFF6878	0.16	-3.5
10,596	-		GFF6878	0.19	-2.9
10,659	+		GFF6878	0.23	-3.1
10,660	-		GFF6878	0.23	-4.2
10,684	+		GFF6878	0.24	-1.1
10,750	+		GFF6878	0.28	-2.0
10,750	+		GFF6878	0.28	-0.6
10,750	+		GFF6878	0.28	-2.7
10,750	+		GFF6878	0.28	-3.9
10,751	-		GFF6878	0.28	-2.0
10,757	+		GFF6878	0.29	-2.6
10,757	+		GFF6878	0.29	-2.2
10,757	+		GFF6878	0.29	-2.5
10,758	-		GFF6878	0.29	-2.3
10,758	-		GFF6878	0.29	-1.4
10,758	-		GFF6878	0.29	-0.6
10,758	-		GFF6878	0.29	+0.1
10,758	-		GFF6878	0.29	-3.5
10,758	-		GFF6878	0.29	-2.5
10,758	-		GFF6878	0.29	-1.7
10,758	-		GFF6878	0.29	-3.5
10,758	-		GFF6878	0.29	-3.1
10,797	+		GFF6878	0.31	-0.9
10,797	+		GFF6878	0.31	-0.6
10,797	+		GFF6878	0.31	-0.6
10,797	+		GFF6878	0.31	-2.7
10,797	+		GFF6878	0.31	-0.9
10,797	+		GFF6878	0.31	-1.7
10,797	+		GFF6878	0.31	-2.5
10,797	+		GFF6878	0.31	-3.0
10,797	+		GFF6878	0.31	-3.3
10,797	+		GFF6878	0.31	-2.5
10,797	+		GFF6878	0.31	-2.3
10,797	+		GFF6878	0.31	-1.4
10,797	+		GFF6878	0.31	-2.0
10,797	+		GFF6878	0.31	-0.7
10,797	+		GFF6878	0.31	-2.4
10,798	-		GFF6878	0.31	-2.5
10,798	-		GFF6878	0.31	-2.3
10,798	-		GFF6878	0.31	-3.8
10,798	-		GFF6878	0.31	-1.5
10,798	-		GFF6878	0.31	-3.0
10,798	-		GFF6878	0.31	-4.2
10,798	-		GFF6878	0.31	-0.3
10,830	+		GFF6878	0.33	-2.5
10,830	+		GFF6878	0.33	-1.5
10,830	+		GFF6878	0.33	-1.3
10,830	+		GFF6878	0.33	-2.0
10,831	-		GFF6878	0.33	-2.5
10,831	-		GFF6878	0.33	-2.3
10,831	-		GFF6878	0.33	-3.8
10,831	-		GFF6878	0.33	-1.9
10,831	-		GFF6878	0.33	-2.5
10,833	+		GFF6878	0.33	-2.3
10,833	+		GFF6878	0.33	-2.6
10,833	+		GFF6878	0.33	-2.2
10,833	+		GFF6878	0.33	-3.6
10,833	+		GFF6878	0.33	-1.5
10,833	+		GFF6878	0.33	-3.7
10,833	+		GFF6878	0.33	-3.4
10,833	+		GFF6878	0.33	-2.4
10,833	+		GFF6878	0.33	-0.9
10,833	+		GFF6878	0.33	-1.5
10,833	+		GFF6878	0.33	-1.1
10,833	+		GFF6878	0.33	-2.9
10,833	+		GFF6878	0.33	-2.3
10,833	+		GFF6878	0.33	-2.5
10,833	+		GFF6878	0.33	-2.2
10,833	+		GFF6878	0.33	-0.7
10,833	+		GFF6878	0.33	-1.3
10,833	+		GFF6878	0.33	-2.9
10,834	-		GFF6878	0.33	-2.3
10,834	-		GFF6878	0.33	-1.9
10,834	-		GFF6878	0.33	-2.1
10,834	-		GFF6878	0.33	-4.0
10,834	-		GFF6878	0.33	-1.7
10,834	-		GFF6878	0.33	-3.1
10,834	-		GFF6878	0.33	-2.7
10,834	-		GFF6878	0.33	-4.0
10,834	-		GFF6878	0.33	-3.8
10,834	-		GFF6878	0.33	-1.1
10,834	-		GFF6878	0.33	-4.4
10,834	-		GFF6878	0.33	-3.5
10,834	-		GFF6878	0.33	-2.5
10,834	-		GFF6878	0.33	+0.7
10,834	-		GFF6878	0.33	-1.5
10,834	-		GFF6878	0.33	-2.5
10,851	+		GFF6878	0.34	+1.7
10,851	+		GFF6878	0.34	-0.6
10,852	-		GFF6878	0.34	-1.6
10,852	-		GFF6878	0.34	-1.6
10,894	+		GFF6878	0.37	-0.9
10,894	+		GFF6878	0.37	-1.3
10,894	+		GFF6878	0.37	-0.6
10,894	+		GFF6878	0.37	-2.1
10,895	-		GFF6878	0.37	-1.5