Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6804 and GFF6805 overlap by 4 nucleotides GFF6805 and GFF6806 are separated by 142 nucleotides GFF6806 and GFF6807 are separated by 16 nucleotides
GFF6804 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 51,248 to 52,021
GFF6804
GFF6805 - FIG00821908: hypothetical protein, at 52,018 to 52,524
GFF6805
GFF6806 - transcriptional regulator, Crp/Fnr family, at 52,667 to 53,410
GFF6806
GFF6807 - BUG/TctC family periplasmic protein, at 53,427 to 54,392
GFF6807
Position (kb) 52
53
54 Strain fitness (log2 ratio) -2
-1
0
1
2 at 51.700 kb on + strand, within GFF6804 at 51.700 kb on + strand, within GFF6804 at 51.700 kb on + strand, within GFF6804 at 51.701 kb on - strand, within GFF6804 at 51.701 kb on - strand, within GFF6804 at 52.145 kb on + strand, within GFF6805 at 52.352 kb on + strand, within GFF6805 at 52.352 kb on + strand, within GFF6805 at 52.353 kb on - strand, within GFF6805 at 52.353 kb on - strand, within GFF6805 at 52.353 kb on - strand, within GFF6805 at 52.355 kb on + strand, within GFF6805 at 52.409 kb on + strand, within GFF6805 at 52.410 kb on - strand, within GFF6805 at 52.600 kb on + strand at 52.600 kb on + strand at 52.601 kb on - strand at 53.518 kb on + strand at 53.644 kb on + strand, within GFF6807 at 53.645 kb on - strand, within GFF6807 at 53.764 kb on + strand, within GFF6807 at 53.764 kb on + strand, within GFF6807 at 53.764 kb on + strand, within GFF6807 at 53.765 kb on - strand, within GFF6807 at 53.765 kb on - strand, within GFF6807 at 53.765 kb on - strand, within GFF6807 at 53.765 kb on - strand, within GFF6807 at 53.765 kb on - strand, within GFF6807 at 53.765 kb on - strand, within GFF6807 at 53.785 kb on + strand, within GFF6807 at 53.935 kb on + strand, within GFF6807 at 53.935 kb on + strand, within GFF6807 at 53.935 kb on + strand, within GFF6807 at 53.935 kb on + strand, within GFF6807 at 53.936 kb on - strand, within GFF6807 at 53.936 kb on - strand, within GFF6807 at 53.936 kb on - strand, within GFF6807 at 54.073 kb on + strand, within GFF6807 at 54.074 kb on - strand, within GFF6807 at 54.074 kb on - strand, within GFF6807 at 54.088 kb on + strand, within GFF6807 at 54.089 kb on - strand, within GFF6807 at 54.089 kb on - strand, within GFF6807 at 54.139 kb on + strand, within GFF6807 at 54.139 kb on + strand, within GFF6807 at 54.139 kb on + strand, within GFF6807 at 54.202 kb on + strand, within GFF6807 at 54.202 kb on + strand, within GFF6807 at 54.202 kb on + strand, within GFF6807 at 54.203 kb on - strand, within GFF6807 at 54.323 kb on - strand at 54.323 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 51,700 + GFF6804 0.58 -0.6 51,700 + GFF6804 0.58 -0.8 51,700 + GFF6804 0.58 +0.6 51,701 - GFF6804 0.59 +0.5 51,701 - GFF6804 0.59 +0.8 52,145 + GFF6805 0.25 -1.7 52,352 + GFF6805 0.66 -1.1 52,352 + GFF6805 0.66 +1.4 52,353 - GFF6805 0.66 +0.4 52,353 - GFF6805 0.66 +0.1 52,353 - GFF6805 0.66 +0.1 52,355 + GFF6805 0.66 -0.2 52,409 + GFF6805 0.77 +0.0 52,410 - GFF6805 0.77 +0.8 52,600 + +0.1 52,600 + -0.6 52,601 - -0.9 53,518 + -0.3 53,644 + GFF6807 0.22 -0.2 53,645 - GFF6807 0.23 +0.1 53,764 + GFF6807 0.35 -0.4 53,764 + GFF6807 0.35 +0.7 53,764 + GFF6807 0.35 -0.7 53,765 - GFF6807 0.35 +2.0 53,765 - GFF6807 0.35 -0.2 53,765 - GFF6807 0.35 +1.4 53,765 - GFF6807 0.35 +0.1 53,765 - GFF6807 0.35 +0.0 53,765 - GFF6807 0.35 +1.2 53,785 + GFF6807 0.37 -0.2 53,935 + GFF6807 0.53 -1.4 53,935 + GFF6807 0.53 +1.2 53,935 + GFF6807 0.53 +1.4 53,935 + GFF6807 0.53 +1.1 53,936 - GFF6807 0.53 -0.1 53,936 - GFF6807 0.53 +0.8 53,936 - GFF6807 0.53 -1.5 54,073 + GFF6807 0.67 +0.4 54,074 - GFF6807 0.67 +0.3 54,074 - GFF6807 0.67 -0.8 54,088 + GFF6807 0.68 +0.4 54,089 - GFF6807 0.69 -0.5 54,089 - GFF6807 0.69 +0.2 54,139 + GFF6807 0.74 +0.5 54,139 + GFF6807 0.74 +1.4 54,139 + GFF6807 0.74 -0.5 54,202 + GFF6807 0.80 +0.2 54,202 + GFF6807 0.80 +0.3 54,202 + GFF6807 0.80 +0.0 54,203 - GFF6807 0.80 -1.8 54,323 - -1.9 54,323 - -0.9
Or see this region's nucleotide sequence