Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6782 and GFF6783 are separated by 21 nucleotides GFF6783 and GFF6784 are separated by 40 nucleotides
GFF6782 - TRAP transporter solute receptor, TAXI family precursor, at 31,546 to 32,925
GFF6782
GFF6783 - endo-type 6-aminohexanoate oligomer hydrolase, at 32,947 to 33,975
GFF6783
GFF6784 - D-amino acid dehydrogenase (EC 1.4.99.6), at 34,016 to 35,311
GFF6784
Position (kb) 32
33
34 Strain fitness (log2 ratio) -2
-1
0
1
2 at 32.216 kb on + strand, within GFF6782 at 32.216 kb on + strand, within GFF6782 at 32.216 kb on + strand, within GFF6782 at 32.534 kb on + strand, within GFF6782 at 32.534 kb on + strand, within GFF6782 at 32.534 kb on + strand, within GFF6782 at 32.534 kb on + strand, within GFF6782 at 32.535 kb on - strand, within GFF6782 at 32.732 kb on + strand, within GFF6782 at 32.732 kb on + strand, within GFF6782 at 32.733 kb on - strand, within GFF6782 at 32.733 kb on - strand, within GFF6782 at 32.753 kb on + strand, within GFF6782 at 33.572 kb on + strand, within GFF6783 at 33.986 kb on + strand at 34.003 kb on + strand at 34.003 kb on + strand at 34.003 kb on + strand at 34.004 kb on - strand at 34.004 kb on - strand at 34.178 kb on + strand, within GFF6784 at 34.178 kb on + strand, within GFF6784 at 34.179 kb on - strand, within GFF6784 at 34.299 kb on - strand, within GFF6784 at 34.299 kb on - strand, within GFF6784 at 34.331 kb on + strand, within GFF6784 at 34.481 kb on + strand, within GFF6784 at 34.527 kb on + strand, within GFF6784 at 34.527 kb on + strand, within GFF6784 at 34.607 kb on + strand, within GFF6784 at 34.607 kb on + strand, within GFF6784 at 34.608 kb on - strand, within GFF6784 at 34.662 kb on - strand, within GFF6784
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 32,216 + GFF6782 0.49 +2.6 32,216 + GFF6782 0.49 -1.2 32,216 + GFF6782 0.49 -0.3 32,534 + GFF6782 0.72 -0.6 32,534 + GFF6782 0.72 +1.0 32,534 + GFF6782 0.72 +0.0 32,534 + GFF6782 0.72 -0.6 32,535 - GFF6782 0.72 +0.2 32,732 + GFF6782 0.86 -1.2 32,732 + GFF6782 0.86 +0.6 32,733 - GFF6782 0.86 -0.4 32,733 - GFF6782 0.86 -0.4 32,753 + GFF6782 0.87 +0.2 33,572 + GFF6783 0.61 -0.2 33,986 + -0.2 34,003 + +1.0 34,003 + -0.2 34,003 + +0.1 34,004 - -0.9 34,004 - -0.9 34,178 + GFF6784 0.12 -0.0 34,178 + GFF6784 0.12 +0.9 34,179 - GFF6784 0.13 -0.2 34,299 - GFF6784 0.22 -0.2 34,299 - GFF6784 0.22 -2.1 34,331 + GFF6784 0.24 -0.1 34,481 + GFF6784 0.36 -0.0 34,527 + GFF6784 0.39 -0.6 34,527 + GFF6784 0.39 -0.2 34,607 + GFF6784 0.46 +0.5 34,607 + GFF6784 0.46 -0.9 34,608 - GFF6784 0.46 -0.1 34,662 - GFF6784 0.50 +0.1
Or see this region's nucleotide sequence