Strain Fitness in Variovorax sp. SCN45 around GFF6763

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
9,401	+		GFF6762	0.35	-0.1
9,401	+		GFF6762	0.35	+0.5
9,401	+		GFF6762	0.35	-1.5
9,401	+		GFF6762	0.35	+0.2
9,402	-		GFF6762	0.35	-0.4
9,402	-		GFF6762	0.35	-0.3
9,402	-		GFF6762	0.35	-0.1
9,402	-		GFF6762	0.35	+0.1
9,402	-		GFF6762	0.35	-0.5
9,402	-		GFF6762	0.35	+1.0
9,402	-		GFF6762	0.35	-0.2
9,402	-		GFF6762	0.35	+0.9
9,404	+		GFF6762	0.36	+0.1
9,404	+		GFF6762	0.36	-0.9
9,404	+		GFF6762	0.36	-0.5
9,404	+		GFF6762	0.36	-0.4
9,405	-		GFF6762	0.36	+0.4
9,405	-		GFF6762	0.36	-1.3
9,572	+		GFF6762	0.52	+0.6
9,572	+		GFF6762	0.52	-0.6
9,572	+		GFF6762	0.52	+1.2
9,572	+		GFF6762	0.52	+3.0
9,573	-		GFF6762	0.52	+0.8
9,573	-		GFF6762	0.52	+0.6
9,573	-		GFF6762	0.52	-0.9
9,611	+		GFF6762	0.55	+0.8
9,611	+		GFF6762	0.55	-1.8
9,611	+		GFF6762	0.55	-0.1
9,611	+		GFF6762	0.55	+0.2
9,611	+		GFF6762	0.55	-0.2
9,611	+		GFF6762	0.55	+0.1
9,611	+		GFF6762	0.55	+0.6
9,612	-		GFF6762	0.55	-0.3
9,612	-		GFF6762	0.55	-0.6
9,612	-		GFF6762	0.55	-0.5
9,612	-		GFF6762	0.55	-0.2
9,612	-		GFF6762	0.55	-0.0
9,612	-		GFF6762	0.55	+0.1
9,612	-		GFF6762	0.55	+0.7
9,612	-		GFF6762	0.55	+0.0
9,612	-		GFF6762	0.55	+1.0
9,612	-		GFF6762	0.55	-0.1
9,612	-		GFF6762	0.55	+0.0
9,636	-		GFF6762	0.58	-0.1
9,968	+		GFF6762	0.89	+1.8
9,968	+		GFF6762	0.89	+0.0
9,969	-		GFF6762	0.89	+0.1
10,112	+				-0.0
10,112	+				-0.3
10,112	+				-1.2
10,112	+				-1.0
10,112	+				-0.8
10,112	+				-1.7
10,113	-				-0.8
10,113	-				-0.4
10,113	-				-0.2
10,113	-				+0.5
10,113	-				+1.4
10,113	-				-1.5
10,116	+				+0.1
10,116	+				+0.4
10,117	-				-1.1
10,117	-				-0.8
10,192	+				-2.2
10,192	+				+2.0
10,192	+				-0.4
10,193	-				-0.1
10,193	-				+0.2
10,193	-				-0.6
10,207	+				-0.4
10,207	+				-0.0
10,208	-				+0.1
10,208	-				+1.3
10,208	-				+0.3
10,208	-				+2.1
10,295	+				-0.2
10,295	+				-0.6
10,296	-				-0.5
10,296	-				+0.5
10,296	-				-1.2
10,296	-				-0.6
10,316	+		GFF6763	0.13	-0.2
10,316	+		GFF6763	0.13	+0.2
10,316	+		GFF6763	0.13	+0.1
10,316	+		GFF6763	0.13	+1.7
10,317	-		GFF6763	0.13	-0.3
10,317	-		GFF6763	0.13	+0.6
10,412	+		GFF6763	0.31	+0.1
10,412	+		GFF6763	0.31	-0.1
10,412	+		GFF6763	0.31	-0.9
10,412	+		GFF6763	0.31	+0.6
10,412	+		GFF6763	0.31	-1.6
10,412	+		GFF6763	0.31	-0.4
10,412	+		GFF6763	0.31	+0.3
10,412	+		GFF6763	0.31	-0.1
10,412	+		GFF6763	0.31	+0.7
10,413	-		GFF6763	0.31	+0.2
10,413	-		GFF6763	0.31	-0.6
10,413	-		GFF6763	0.31	+1.4
10,413	-		GFF6763	0.31	+0.1
10,413	-		GFF6763	0.31	+0.1
10,413	-		GFF6763	0.31	-0.1
10,413	-		GFF6763	0.31	-1.9
10,439	+		GFF6763	0.36	+0.4
10,439	+		GFF6763	0.36	+1.4
10,440	-		GFF6763	0.36	+0.3
10,440	-		GFF6763	0.36	+0.1
10,440	-		GFF6763	0.36	+0.3
10,440	-		GFF6763	0.36	+0.4
10,440	-		GFF6763	0.36	-0.7
10,440	-		GFF6763	0.36	+0.5
10,440	-		GFF6763	0.36	-0.0
10,440	-		GFF6763	0.36	+0.1
10,440	-		GFF6763	0.36	-2.3
10,942	+		GFF6764	0.16	-0.4
10,943	-		GFF6764	0.17	+0.2
10,984	+		GFF6764	0.26	+0.6
10,984	+		GFF6764	0.26	+0.5
10,984	+		GFF6764	0.26	-0.5
11,403	+				-0.1
11,403	+				+0.8
11,412	+				+0.7
11,412	+				+0.0
11,412	+				+0.4
11,412	+				+0.6
11,479	+				+0.1
11,479	+				-0.9
11,480	-				-1.8
11,480	-				-1.8
11,480	-				-0.3
11,674	+		GFF6765	0.18	-0.0