Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6695 and GFF6696 are separated by 33 nucleotides GFF6696 and GFF6697 are separated by 99 nucleotides GFF6697 and GFF6698 are separated by 41 nucleotides GFF6698 and GFF6699 are separated by 175 nucleotides
GFF6695 - Ubiquinol-cytochrome C reductase, cytochrome B subunit (EC 1.10.2.2), at 3,143 to 4,579
GFF6695
GFF6696 - Ubiquinol-cytochrome C reductase, cytochrome C1 subunit, at 4,613 to 5,389
GFF6696
GFF6697 - Stringent starvation protein A, at 5,489 to 6,100
GFF6697
GFF6698 - ClpXP protease specificity-enhancing factor SspB, at 6,142 to 6,723
GFF6698
GFF6699 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 6,899 to 8,065
GFF6699
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1 at 4.781 kb on + strand, within GFF6696 at 4.781 kb on + strand, within GFF6696 at 4.781 kb on + strand, within GFF6696 at 4.781 kb on + strand, within GFF6696 at 4.781 kb on + strand, within GFF6696 at 4.818 kb on - strand, within GFF6696 at 4.915 kb on - strand, within GFF6696 at 5.012 kb on + strand, within GFF6696 at 5.012 kb on + strand, within GFF6696 at 5.012 kb on + strand, within GFF6696 at 5.012 kb on + strand, within GFF6696 at 5.012 kb on + strand, within GFF6696 at 5.012 kb on + strand, within GFF6696 at 5.013 kb on - strand, within GFF6696 at 5.018 kb on + strand, within GFF6696 at 5.018 kb on + strand, within GFF6696 at 5.018 kb on + strand, within GFF6696 at 5.018 kb on + strand, within GFF6696 at 5.019 kb on - strand, within GFF6696 at 5.019 kb on - strand, within GFF6696 at 5.019 kb on - strand, within GFF6696 at 5.019 kb on - strand, within GFF6696 at 5.019 kb on - strand, within GFF6696 at 5.019 kb on - strand, within GFF6696 at 5.024 kb on + strand, within GFF6696 at 5.024 kb on + strand, within GFF6696 at 5.024 kb on + strand, within GFF6696 at 5.025 kb on - strand, within GFF6696 at 5.025 kb on - strand, within GFF6696 at 5.025 kb on - strand, within GFF6696 at 5.036 kb on + strand, within GFF6696 at 5.036 kb on + strand, within GFF6696 at 5.036 kb on + strand, within GFF6696 at 5.036 kb on + strand, within GFF6696 at 5.037 kb on - strand, within GFF6696 at 5.037 kb on - strand, within GFF6696 at 5.037 kb on - strand, within GFF6696 at 5.039 kb on + strand, within GFF6696 at 5.039 kb on + strand, within GFF6696 at 5.040 kb on - strand, within GFF6696 at 5.228 kb on + strand, within GFF6696 at 5.228 kb on + strand, within GFF6696 at 5.258 kb on + strand, within GFF6696 at 5.258 kb on + strand, within GFF6696 at 5.259 kb on - strand, within GFF6696 at 5.369 kb on + strand at 5.388 kb on - strand at 6.098 kb on + strand at 6.098 kb on + strand at 6.098 kb on + strand at 6.099 kb on - strand at 6.099 kb on - strand at 6.099 kb on - strand at 6.102 kb on + strand at 6.102 kb on + strand at 6.102 kb on + strand at 6.103 kb on - strand at 6.103 kb on - strand at 6.103 kb on - strand at 6.178 kb on + strand at 6.184 kb on - strand at 6.196 kb on + strand at 6.196 kb on + strand at 6.196 kb on + strand at 6.197 kb on - strand at 6.197 kb on - strand at 6.197 kb on - strand at 6.197 kb on - strand at 6.229 kb on + strand, within GFF6698 at 6.229 kb on + strand, within GFF6698 at 6.229 kb on + strand, within GFF6698 at 6.230 kb on - strand, within GFF6698 at 6.230 kb on - strand, within GFF6698 at 6.230 kb on - strand, within GFF6698 at 6.275 kb on - strand, within GFF6698 at 6.421 kb on + strand, within GFF6698 at 6.421 kb on + strand, within GFF6698 at 6.421 kb on + strand, within GFF6698 at 6.421 kb on + strand, within GFF6698 at 6.422 kb on - strand, within GFF6698 at 6.422 kb on - strand, within GFF6698 at 6.422 kb on - strand, within GFF6698 at 6.632 kb on + strand, within GFF6698 at 6.632 kb on + strand, within GFF6698 at 6.633 kb on - strand, within GFF6698 at 6.633 kb on - strand, within GFF6698 at 6.633 kb on - strand, within GFF6698 at 6.633 kb on - strand, within GFF6698 at 6.756 kb on + strand at 6.756 kb on + strand at 6.942 kb on + strand at 6.943 kb on - strand at 7.083 kb on + strand, within GFF6699 at 7.083 kb on + strand, within GFF6699 at 7.083 kb on + strand, within GFF6699 at 7.083 kb on + strand, within GFF6699 at 7.083 kb on + strand, within GFF6699 at 7.083 kb on + strand, within GFF6699 at 7.083 kb on + strand, within GFF6699 at 7.083 kb on + strand, within GFF6699 at 7.084 kb on - strand, within GFF6699 at 7.084 kb on - strand, within GFF6699 at 7.084 kb on - strand, within GFF6699 at 7.084 kb on - strand, within GFF6699 at 7.084 kb on - strand, within GFF6699 at 7.084 kb on - strand, within GFF6699 at 7.084 kb on - strand, within GFF6699 at 7.084 kb on - strand, within GFF6699 at 7.084 kb on - strand, within GFF6699 at 7.084 kb on - strand, within GFF6699 at 7.084 kb on - strand, within GFF6699 at 7.084 kb on - strand, within GFF6699
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 4,781 + GFF6696 0.22 -0.2 4,781 + GFF6696 0.22 -1.7 4,781 + GFF6696 0.22 -1.7 4,781 + GFF6696 0.22 -1.5 4,781 + GFF6696 0.22 -1.1 4,818 - GFF6696 0.26 -1.9 4,915 - GFF6696 0.39 -1.7 5,012 + GFF6696 0.51 -1.2 5,012 + GFF6696 0.51 +1.0 5,012 + GFF6696 0.51 -0.7 5,012 + GFF6696 0.51 -2.2 5,012 + GFF6696 0.51 -0.8 5,012 + GFF6696 0.51 -1.0 5,013 - GFF6696 0.51 -1.1 5,018 + GFF6696 0.52 -0.3 5,018 + GFF6696 0.52 -0.8 5,018 + GFF6696 0.52 -1.0 5,018 + GFF6696 0.52 -1.9 5,019 - GFF6696 0.52 +0.4 5,019 - GFF6696 0.52 +0.9 5,019 - GFF6696 0.52 -0.2 5,019 - GFF6696 0.52 -0.7 5,019 - GFF6696 0.52 -1.1 5,019 - GFF6696 0.52 -1.7 5,024 + GFF6696 0.53 -1.4 5,024 + GFF6696 0.53 +0.2 5,024 + GFF6696 0.53 +0.3 5,025 - GFF6696 0.53 +0.0 5,025 - GFF6696 0.53 -2.7 5,025 - GFF6696 0.53 -1.7 5,036 + GFF6696 0.54 -1.0 5,036 + GFF6696 0.54 -2.6 5,036 + GFF6696 0.54 -1.0 5,036 + GFF6696 0.54 -0.7 5,037 - GFF6696 0.55 +0.2 5,037 - GFF6696 0.55 -0.4 5,037 - GFF6696 0.55 +0.1 5,039 + GFF6696 0.55 -1.5 5,039 + GFF6696 0.55 -0.4 5,040 - GFF6696 0.55 +0.6 5,228 + GFF6696 0.79 -1.1 5,228 + GFF6696 0.79 -2.2 5,258 + GFF6696 0.83 -1.1 5,258 + GFF6696 0.83 -0.9 5,259 - GFF6696 0.83 -0.9 5,369 + +0.1 5,388 - +0.0 6,098 + +0.7 6,098 + -0.1 6,098 + +1.3 6,099 - -0.6 6,099 - -0.4 6,099 - -0.6 6,102 + -2.7 6,102 + -1.4 6,102 + +0.0 6,103 - +0.2 6,103 - +0.7 6,103 - +0.3 6,178 + +0.4 6,184 - -0.1 6,196 + -0.2 6,196 + -0.1 6,196 + -0.4 6,197 - +0.4 6,197 - -0.4 6,197 - -0.7 6,197 - +0.7 6,229 + GFF6698 0.15 +0.5 6,229 + GFF6698 0.15 -0.1 6,229 + GFF6698 0.15 +1.0 6,230 - GFF6698 0.15 -0.0 6,230 - GFF6698 0.15 -0.2 6,230 - GFF6698 0.15 -0.1 6,275 - GFF6698 0.23 +0.6 6,421 + GFF6698 0.48 -0.1 6,421 + GFF6698 0.48 +0.3 6,421 + GFF6698 0.48 +0.2 6,421 + GFF6698 0.48 -0.1 6,422 - GFF6698 0.48 -0.0 6,422 - GFF6698 0.48 +1.6 6,422 - GFF6698 0.48 +0.3 6,632 + GFF6698 0.84 -1.0 6,632 + GFF6698 0.84 +0.0 6,633 - GFF6698 0.84 -0.4 6,633 - GFF6698 0.84 -1.5 6,633 - GFF6698 0.84 +0.1 6,633 - GFF6698 0.84 +0.5 6,756 + -1.1 6,756 + +1.6 6,942 + -0.1 6,943 - -0.9 7,083 + GFF6699 0.16 +0.2 7,083 + GFF6699 0.16 -2.3 7,083 + GFF6699 0.16 +0.8 7,083 + GFF6699 0.16 +0.0 7,083 + GFF6699 0.16 -1.7 7,083 + GFF6699 0.16 -0.1 7,083 + GFF6699 0.16 -1.6 7,083 + GFF6699 0.16 +0.3 7,084 - GFF6699 0.16 -0.5 7,084 - GFF6699 0.16 +0.3 7,084 - GFF6699 0.16 +0.2 7,084 - GFF6699 0.16 -1.0 7,084 - GFF6699 0.16 -0.9 7,084 - GFF6699 0.16 +0.0 7,084 - GFF6699 0.16 -0.4 7,084 - GFF6699 0.16 -0.4 7,084 - GFF6699 0.16 +0.0 7,084 - GFF6699 0.16 +0.1 7,084 - GFF6699 0.16 -0.7 7,084 - GFF6699 0.16 -0.5
Or see this region's nucleotide sequence